Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0761.Seq
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.48
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.48
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.48
At5g56380.1 68418.m07038 F-box family protein similar to unknown... 31 0.64
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 0.64
At3g48120.1 68416.m05248 expressed protein 31 1.1
At5g01370.1 68418.m00050 expressed protein 30 1.5
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 30 1.5
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 30 1.5
At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein... 30 1.9
At1g72080.1 68414.m08332 hypothetical protein 30 1.9
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 29 3.4
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 29 4.5
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 410 SRTPETGRGRSKRARNIRGRNTSRGRA-NRSRS 505
SR+P GR SK RGR+ SR R+ +RSRS
Sbjct: 201 SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRS 233
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 410 SRTPETGRGRSKRARNIRGRNTSRGRA-NRSRS 505
SR+P GR SK RGR+ SR R+ +RSRS
Sbjct: 201 SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRS 233
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 410 SRTPETGRGRSKRARNIRGRNTSRGRA-NRSRS 505
SR+P GR SK RGR+ SR R+ +RSRS
Sbjct: 201 SRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRS 233
>At5g56380.1 68418.m07038 F-box family protein similar to unknown
protein (emb|CAB62440.1); contains Pfam profile PF00646:
F-box domain
Length = 439
Score = 31.5 bits (68), Expect = 0.64
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +3
Query: 423 RPAEVAQKELGILGVEIPAEVVPIEAGVL*RSGQLSSRN*RYTDFQLRQHRLLPRHIFTS 602
R V Q LG + + + I G+ + G + + +YTD + LPR ++T
Sbjct: 77 REGRVLQTLFLKLGRQCSYDDIAIWVGIAVKRGLMELKL-KYTDSYYPKRSSLPRSLYTC 135
Query: 603 QTLFVTKPKDV*FLDTEDL 659
+TL V K K +LD DL
Sbjct: 136 ETLVVLKLKKG-YLDVPDL 153
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 359 KKNSCEDQKELRSTQQISRTPETGRGRSKRARNIRGRNTSRGRANRSRS 505
+ N +D++ RS + SR+P RGR R+R+ RG N+ + ++SRS
Sbjct: 131 RSNRFQDRR--RSPPRYSRSPPPRRGRRSRSRS-RGYNSPPAKRHQSRS 176
>At3g48120.1 68416.m05248 expressed protein
Length = 328
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +2
Query: 392 RSTQQISRTPETGRGRSKRARNIRGRNTSRGRANRSRS 505
R + + R R RS RN G SR R+NRSRS
Sbjct: 121 RRSSYVDRERRRSRSRSAERRNRYGDRESRRRSNRSRS 158
>At5g01370.1 68418.m00050 expressed protein
Length = 427
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 303 TRSKGNVEAVIVDPVEPPSKRTRAKTKKNSEVRSRFHGRPRPAEVAQKE 449
+RSK E V+ D +PP + K K+N +V +F PR +VA+K+
Sbjct: 190 SRSK-RFEKVVEDSKKPPLPPSAPKKKENEKVAKKFKDEPR--KVAKKK 235
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 362 KNSCEDQKELRSTQQISRTPETGRGRSKRARNIRGRNTSRGRA-NRSRSTV 511
KNS K+ R SR+P R +R R R+ SRGR+ +RSRS V
Sbjct: 137 KNS-PSPKKARQGGSYSRSPVKSRSPRRRRSPSRSRSYSRGRSYSRSRSPV 186
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 362 KNSCEDQKELRSTQQISRTPETGRGRSKRARNIRGRNTSRGRA-NRSRSTV 511
KNS K+ R SR+P R +R R R+ SRGR+ +RSRS V
Sbjct: 96 KNS-PSPKKARQGGSYSRSPVKSRSPRRRRSPSRSRSYSRGRSYSRSRSPV 145
>At2g07760.1 68415.m01004 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 530
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +2
Query: 425 TGRGRSKRARNIRGRNTSRGRANRSR 502
T RGR R R RGR +RGR NR R
Sbjct: 505 TTRGRGNRGRGNRGRG-NRGRGNRGR 529
>At1g72080.1 68414.m08332 hypothetical protein
Length = 243
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 410 SRTPETGRGRSKRARNIRGRNTSRGRA-NRSRS 505
SR+ GRGR + RGR RGR NRSRS
Sbjct: 118 SRSRGRGRGRGRGRGRGRGRGRGRGRGRNRSRS 150
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Frame = +2
Query: 383 KELRSTQQISRTPETGRGRSK-RARNI-RGRNTSRGRA-NRSRS 505
K+ S++ SR+P R RS+ R+R+ RGR+ SR R+ +RS+S
Sbjct: 196 KKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKS 239
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 410 SRTPETGRGRSKRARNIRGRNTSRGRANRSRS 505
SR+ TGRG R+R+ RGR S GR+ R S
Sbjct: 239 SRSRSTGRGEFSRSRSPRGR--SHGRSYREDS 268
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,423,966
Number of Sequences: 28952
Number of extensions: 316710
Number of successful extensions: 990
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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