Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0746.Seq
         (875 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   4.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   9.6  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   9.6  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   9.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 210  VPRGSAEGRYRGMQIGLFDFEYTHQCQGTSEASKKQKL 323
            VP+  A G +   +  + D++Y  +C G  + ++K +L
Sbjct: 1230 VPQNCAPGLHYNPEEHMCDWKYKVKCVGRKQLAQKYQL 1267


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 666 VPRGLGTTAPWPI 704
           V RGLG  A WP+
Sbjct: 608 VARGLGAEAMWPV 620


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 257 AYLHSPVPPFCRSSRNCSYSALRSPTVS 174
           AYL   V  + R+ R C Y   + P++S
Sbjct: 128 AYLIPEVGTWIRAVRKCLYKLWKMPSLS 155


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 257 AYLHSPVPPFCRSSRNCSYSALRSPTVS 174
           AYL   V  + R+ R C Y   + P++S
Sbjct: 128 AYLIPEVGTWIRAVRKCLYKLWKMPSLS 155


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/43 (20%), Positives = 17/43 (39%)
 Frame = +1

Query: 73  TVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAE 201
           T+S  CK        +  H+ V F +++   ++    G    E
Sbjct: 31  TISQGCKACGYHSPLESNHKLVTFILKNPPNLNPAVQGSSLTE 73


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 633 HINTIRFPLXIILNG*WCRGRVSFR 559
           H+N+ R PL +  +  W + +  F+
Sbjct: 404 HLNSNRAPLGLHFHASWLKSKKEFK 428


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -3

Query: 633 HINTIRFPLXIILNG*WCRGRVSFR 559
           H+N+ R PL +  +  W + +  F+
Sbjct: 411 HLNSNRAPLGLHFHASWLKSKKEFK 435


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,950
Number of Sequences: 336
Number of extensions: 3249
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)