Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0746.Seq
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    58   2e-09
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    32   0.093
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   3.5  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   3.5  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 26/57 (45%), Positives = 37/57 (64%)
 Frame = +3

Query: 312 KQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 482
           + K+  +SW P  A +K KM+YSSS D L+++  G+   IQATD SE + E V EK+
Sbjct: 78  RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKV 134



 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 21/54 (38%), Positives = 29/54 (53%)
 Frame = +1

Query: 64  SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDL 225
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + +++ FL DL
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDL 57


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 32.3 bits (70), Expect = 0.093
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +3

Query: 306 SKKQKLFLMSWCPVTAKVKKKMLYSSS 386
           SKK  L L+S+ P  A V++KMLY+SS
Sbjct: 76  SKKNLLQLISYVPENANVRRKMLYASS 102



 Score = 30.3 bits (65), Expect = 0.38
 Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
 Frame = +3

Query: 318 KLFLMSWCPVTAKVKKKMLYSSS----FDALKKSL-VGVQKYIQATDLSEASQEAV 470
           K+  +  CP+ A VK +M+YSSS     D++K  L + +   I++ D ++ +++ +
Sbjct: 244 KILFIYICPMQATVKHRMVYSSSKLGLLDSIKAELGIVIDGKIESNDAADITEKEI 299


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 384 SFDALKKSLVGVQKYIQATDLSEASQ 461
           S +AL++ L G + Y+Q+TD++  S+
Sbjct: 188 SLEALQEELEGFEDYVQSTDIAAMSK 213


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +2

Query: 398 EKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSFTHELATKPNPLSDTPALNDTRP 577
           EK P  S++     R  G   G  +    +H       +H     P P  D+   +D RP
Sbjct: 131 EKRPHDSADEDAPRRKHGKCKGKGKHHKGKHAKGKGKKSH-----PKPEDDSVFFDDERP 185

Query: 578 RHH 586
           +HH
Sbjct: 186 KHH 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,689
Number of Sequences: 5004
Number of extensions: 52961
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)