Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0746.Seq
         (875 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            43   3e-04
SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.17 
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             33   0.30 
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.70 

>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +3

Query: 279 HQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 452
           H+ Q    A      FL   C   A +KKKML  S+++ LKK   G++KY +A+++ E
Sbjct: 241 HKTQDHRSALSDLVFFLFDRCSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298


>SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +2

Query: 452 SVSGGRRREAPRHRSPINSFTH----ELATKPNPLS 547
           + +GGRRRE P  R+P+  F      E A KP+P++
Sbjct: 45  AAAGGRRREGPTARAPVGGFAEVGNAEFAEKPSPIT 80


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +3

Query: 321 LFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRAT 491
           L  +SWC   A ++KKM  +S+ D ++K        + A D  +   + +  K   T
Sbjct: 93  LVFISWCSDKAPIEKKMKLASTQDYVRKKFSEATTSVNANDFDDLDYDEIAAKAEKT 149


>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +3

Query: 321 LFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 479
           L  + WC   A +KK+M+ +++ + LK   V V+K  Q  D ++ + + + +K
Sbjct: 93  LVYIFWCSDNAPIKKRMVSAATNELLKTKFV-VKKVFQINDRADLNYDDIADK 144



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
 Frame = +1

Query: 64  SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 210
           SG+ + D     Y+ ++ K+K H++  F I D+          K++D  T  E  A ++Q
Sbjct: 4   SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63

Query: 211 FLEDL 225
            LE L
Sbjct: 64  MLEKL 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,074,703
Number of Sequences: 59808
Number of extensions: 437443
Number of successful extensions: 1170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)