Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0746.Seq
(875 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 57 2e-08
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 57 2e-08
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 50 3e-06
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 50 3e-06
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 47 2e-05
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr... 28 7.6
U80955-9|AAN65296.1| 863|Caenorhabditis elegans Hypothetical pr... 28 7.6
U80955-8|AAN65295.1| 881|Caenorhabditis elegans Hypothetical pr... 28 7.6
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = +1
Query: 58 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK 231
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKK 59
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +3
Query: 264 DFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQK--YIQA 437
D E T Q QG S K+ + +CP A V+++MLY+SS ALK SL G++ +QA
Sbjct: 73 DVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQA 131
Query: 438 TDLSEASQEAVEEKLRATDR 497
+++S+ +++V+ L + R
Sbjct: 132 SEMSDLDEKSVKSDLMSNQR 151
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Frame = +1
Query: 58 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK 231
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKK 59
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +3
Query: 264 DFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQK--YIQA 437
D E T Q QG S K+ + +CP A V+++MLY+SS ALK SL G++ +QA
Sbjct: 73 DVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQA 131
Query: 438 TDLSEASQEAVEEKLRATDR 497
+++S+ +++V+ L + R
Sbjct: 132 SEMSDLDEKSVKSDLMSNQR 151
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 49.6 bits (113), Expect = 3e-06
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 434
+FDF++T G SK K+ + CP A +KKKM+Y+SS A+K SL G Q
Sbjct: 84 VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142
Query: 435 ATDLSEASQEAVEEKL 482
+D SE S + + KL
Sbjct: 143 VSDESEMSHKELLNKL 158
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 58 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 177
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 49.6 bits (113), Expect = 3e-06
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 434
+FDF++T G SK K+ + CP A +KKKM+Y+SS A+K SL G Q
Sbjct: 84 VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142
Query: 435 ATDLSEASQEAVEEKL 482
+D SE S + + KL
Sbjct: 143 VSDESEMSHKELLNKL 158
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 58 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 177
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 47.2 bits (107), Expect = 2e-05
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 434
+FDF++T G SK K+ + CP A +KKKM+Y+SS A+K SL G Q
Sbjct: 84 VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142
Query: 435 ATDLSEASQE 464
+D SE S +
Sbjct: 143 VSDESEMSHK 152
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Frame = +3
Query: 282 QCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 455
Q SE S K+ L++ CP A V+++MLY+SS ALK SL G++ +QA+++S+
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197
Query: 456 SQEAVEEKLRATDR 497
+++V+ L + R
Sbjct: 198 DEKSVKSDLMSNQR 211
Score = 31.5 bits (68), Expect = 0.82
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +1
Query: 58 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 177
M+SGV V +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40
>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
protein F11E6.7 protein.
Length = 1011
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 395 SEKVPCRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSFTHELATKPNPLSDTPALNDTR 574
++ +P V PS + SV + +P P N + K +P+S+TP++ T+
Sbjct: 749 ADAIPPEIEAVSPSSKDSQSVPMETKDNSP----PANEVIAQELPKASPISNTPSVESTQ 804
Query: 575 P 577
P
Sbjct: 805 P 805
>U80955-9|AAN65296.1| 863|Caenorhabditis elegans Hypothetical
protein T04C9.1b protein.
Length = 863
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 237 YRGMQIGLFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKML 374
Y+ Q+ FE+ QC E S + + C VT+KV+K M+
Sbjct: 400 YKQTQLDDIGFEFVQQCIDILEESGIHEQGVYRNCGVTSKVQKMMM 445
>U80955-8|AAN65295.1| 881|Caenorhabditis elegans Hypothetical
protein T04C9.1a protein.
Length = 881
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 237 YRGMQIGLFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKML 374
Y+ Q+ FE+ QC E S + + C VT+KV+K M+
Sbjct: 400 YKQTQLDDIGFEFVQQCIDILEESGIHEQGVYRNCGVTSKVQKMMM 445
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,700,121
Number of Sequences: 27780
Number of extensions: 313810
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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