Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0746.Seq
(875 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 64 2e-10
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 64 2e-10
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 63 2e-10
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 62 5e-10
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 62 6e-10
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 61 1e-09
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 60 2e-09
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 59 3e-09
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 58 6e-09
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 57 1e-08
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 56 2e-08
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 54 9e-08
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 52 7e-07
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 46 3e-05
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 31 0.76
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 29 3.1
At3g60000.1 68416.m06699 hypothetical protein contains Pfam pro... 29 5.4
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t... 28 9.4
At4g17380.1 68417.m02605 DNA mismatch repair MutS family protein... 28 9.4
At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein si... 28 9.4
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 63.7 bits (148), Expect = 2e-10
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++ T+E +K K+F ++WCP AKV+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 62 IYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQA 116
Query: 438 TDLSEASQEAVEEKL 482
TD +E + ++ ++
Sbjct: 117 TDPTEMDLDVLKSRV 131
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 70 VTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGTGE 246
+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L E
Sbjct: 1 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP---ADE 57
Query: 247 CR 252
CR
Sbjct: 58 CR 59
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 63.7 bits (148), Expect = 2e-10
Identities = 28/75 (37%), Positives = 49/75 (65%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++ T+E +K K+F ++WCP AKV+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 69 IYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQA 123
Query: 438 TDLSEASQEAVEEKL 482
TD +E + ++ ++
Sbjct: 124 TDPTEMDLDVLKSRV 138
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP--- 61
Query: 238 TGECR 252
ECR
Sbjct: 62 ADECR 66
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/75 (38%), Positives = 50/75 (66%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++T T + +K K+F ++W P T++V+ KMLY+SS D K+ + G+Q +QA
Sbjct: 69 VYDFDFT-----TEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQA 123
Query: 438 TDLSEASQEAVEEKL 482
TD SE S + ++ +L
Sbjct: 124 TDPSEMSLDIIKGRL 138
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 234
ASG+ V+D CK + E+K + +R++VF I DEK Q+ +E +G Y+ F +
Sbjct: 5 ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSIP-- 61
Query: 235 GTGECR 252
ECR
Sbjct: 62 -DDECR 66
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 62.1 bits (144), Expect = 5e-10
Identities = 29/75 (38%), Positives = 50/75 (66%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++D+++T T E +K K+F ++W P T++V+ KMLY+SS D K+ L G+Q +QA
Sbjct: 69 VYDYDFT-----TPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQA 123
Query: 438 TDLSEASQEAVEEKL 482
TD SE S + ++ ++
Sbjct: 124 TDPSEMSLDIIKGRV 138
Score = 44.8 bits (101), Expect = 8e-05
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 234
ASG+ VSD CK + E+K + +R++VF I DEK Q+ ++ +G YE F + +
Sbjct: 5 ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPE- 62
Query: 235 GTGECR 252
ECR
Sbjct: 63 --DECR 66
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 61.7 bits (143), Expect = 6e-10
Identities = 28/65 (43%), Positives = 44/65 (67%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++ T+E +K K+F ++WCP AKV+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 69 IYDFDFV-----TAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQA 123
Query: 438 TDLSE 452
TD +E
Sbjct: 124 TDPTE 128
Score = 48.4 bits (110), Expect = 6e-06
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VG+ YE+F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61
Query: 238 TGECR 252
ECR
Sbjct: 62 ADECR 66
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/74 (37%), Positives = 50/74 (67%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++T T+E +K K+F ++W P +++V+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 67 VYDFDFT-----TAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQA 121
Query: 438 TDLSEASQEAVEEK 479
TD SE S + ++ +
Sbjct: 122 TDPSEMSLDIIKSR 135
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 240
ASG+ V D CK + E+K + +R+++F I D +Q+ VE +G Y+ F L
Sbjct: 5 ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDFTNYLP---P 60
Query: 241 GECR 252
ECR
Sbjct: 61 NECR 64
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 60.1 bits (139), Expect = 2e-09
Identities = 28/74 (37%), Positives = 47/74 (63%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++ T+E +K K+F ++W P TAKV+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 67 IYDFDFV-----TAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQA 121
Query: 438 TDLSEASQEAVEEK 479
TD +E + + +
Sbjct: 122 TDPTEMGLDVFKSR 135
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDL 225
ASG+ V D CK + E+K + R +V+ I D KQ+ VE +GE Y+ F L
Sbjct: 5 ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASL 58
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/74 (37%), Positives = 48/74 (64%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
+FDF++ T E +K K+F ++W P +++V+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 60 VFDFDFI-----TDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQA 114
Query: 438 TDLSEASQEAVEEK 479
TD SE S + ++ +
Sbjct: 115 TDPSEMSFDIIKSR 128
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 70 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 249
+ V D CK + E+K + +R+++F I D +Q+ VE +G + Y+ F L EC
Sbjct: 1 MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASLP---ANEC 56
Query: 250 R 252
R
Sbjct: 57 R 57
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 58.4 bits (135), Expect = 6e-09
Identities = 28/74 (37%), Positives = 45/74 (60%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++ TSE +K K+F +W P T+ ++ K+LYS+S D L + L G+ IQA
Sbjct: 76 VYDFDFV-----TSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQA 130
Query: 438 TDLSEASQEAVEEK 479
TD +E E + E+
Sbjct: 131 TDPTEVDLEVLRER 144
Score = 49.2 bits (112), Expect = 4e-06
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 64 SGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDL 225
SG+ V+D KTT+ E+++ K HRYVVF I +K++ VE G Y+ FL L
Sbjct: 13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASL 67
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/74 (35%), Positives = 46/74 (62%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
+FDF++ +SE + ++F ++W P TA+V+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 69 IFDFDFV-----SSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 123
Query: 438 TDLSEASQEAVEEK 479
TD +E + + +
Sbjct: 124 TDPTEMDLDVFKSR 137
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 238 TGECR 252
ECR
Sbjct: 62 ADECR 66
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/57 (40%), Positives = 40/57 (70%)
Frame = +3
Query: 312 KQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 482
++K+ ++W P TAK++KKM+YSS+ D K+ L G+Q ATDL++ S +A+ ++
Sbjct: 76 ERKICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRI 132
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = +1
Query: 70 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVE------TVGERNAEYEQFLEDLQK 231
+ + D CK T+ E+K+ + R +V+ I D Q+ VE GER YE+F L
Sbjct: 1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLP- 59
Query: 232 GGTGECR 252
ECR
Sbjct: 60 --ADECR 64
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 54.4 bits (125), Expect = 9e-08
Identities = 23/76 (30%), Positives = 48/76 (63%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
+FDF++ T + +K K+F ++W P +K++ K+LY++S D L++ L G+ +QA
Sbjct: 73 VFDFDFV-----TVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQA 127
Query: 438 TDLSEASQEAVEEKLR 485
TD +E + ++++ +
Sbjct: 128 TDPTEMGFDIIQDRAK 143
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +1
Query: 55 KMAS-GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLED 222
KMA+ G+ V+D C +++ ++K K HRY+VF I ++ +++ V+ VG Y LED
Sbjct: 6 KMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHD-LED 62
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 51.6 bits (118), Expect = 7e-07
Identities = 22/76 (28%), Positives = 47/76 (61%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPVTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
+FDF+Y T + + K+F ++W P +++++KM+Y++S L++ L GV +QA
Sbjct: 60 VFDFDYV-----TVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQA 114
Query: 438 TDLSEASQEAVEEKLR 485
TD +E + ++++ +
Sbjct: 115 TDPTEMGFDKIQDRAK 130
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 76 VSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDL 225
++D CK ++ E+K K HRYVV+ + ++ +++ V+ VG Y+ L
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASL 51
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 238 TGECR 252
ECR
Sbjct: 62 ADECR 66
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 31.5 bits (68), Expect = 0.76
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 175 ETVGERNAEYEQFLEDLQKGGTGE 246
ET G+ +EYE+F E+ ++GG GE
Sbjct: 45 ETDGDSTSEYEEFEEEKERGGEGE 68
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 422 EVHPSDRPLGSVSGGRRREAPRHRSPINSFTHELATKPNPLSDTPALNDTRPRHH 586
++ P P+ + +G R P + + NS H+L P P A+ T HH
Sbjct: 62 QLRPPSIPVTTNTGHRHCRPPSNPATTNSGHHQLRPPPPPPPPLSAITTTGHHHH 116
>At3g60000.1 68416.m06699 hypothetical protein contains Pfam
profile: PF04484 family of unknown function (DUF566)
Length = 451
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 413 RSSEV--HPSDRPLGSVSGGRRREAPRHRSPINSFTHELATKPNPLSDTP 556
RSSE D P ++S R+ P H P+N +H L T P P+ P
Sbjct: 88 RSSETAARSLDSPF-TLSQSRKSSKPSHLKPLNENSHRLET-PTPMVPPP 135
>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 917
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +2
Query: 314 TEALPDVVVPGHRQG*E---EDVVL*LVRRSEKVPCRSSEVHPSDRPLGSVSGGRRREAP 484
TEA VVP G E ED + + +R+ ++ P + + + + G + +P
Sbjct: 3 TEAFVKPVVPNGHDGYEDEDEDDIPLVFKRNSNTAATTNRPSPINNAMRNSAIGSTKSSP 62
Query: 485 RHRSPINSFTHELATKPNPLSDTPAL 562
RSP+ S ++ PAL
Sbjct: 63 PMRSPLTSPNRSASSSTRSSMMKPAL 88
>At4g17380.1 68417.m02605 DNA mismatch repair MutS family protein
similar to SP|O15457 MutS protein homolog 4 from {Homo
sapiens}, from [Mus musculus] GI:16416651; contains Pfam
profile PF00488: MutS domain V
Length = 574
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 500 INSFTHELATKPNPLSDTPALNDTRP 577
+NSF H ++TKP P L D+ P
Sbjct: 328 VNSFAHTISTKPVDRYSRPELTDSGP 353
>At3g26720.1 68416.m03341 glycosyl hydrolase family 38 protein
similar to lysosomal alpha-mannosidase GI:3522867 from
[Homo sapiens]
Length = 1019
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +2
Query: 440 RPLGSVSGGRRREAPRHRSPINSFTHELATKPNPLSDTPALND 568
+ LGS S PRH P FT E+ P+ D P L D
Sbjct: 217 KSLGSSSQIFTGVFPRHYDPPEGFTFEINDVSAPIQDDPLLFD 259
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,966,741
Number of Sequences: 28952
Number of extensions: 299008
Number of successful extensions: 902
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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