Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0745.Seq
(702 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P75801 Cluster: Uncharacterized membrane protein yliF; ... 229 4e-59
UniRef50_UPI00015C5737 Cluster: hypothetical protein CKO_01565; ... 50 4e-05
UniRef50_Q87K30 Cluster: GGDEF family protein; n=3; Vibrio|Rep: ... 50 7e-05
UniRef50_A6PFY8 Cluster: Diguanylate cyclase; n=1; Shewanella se... 49 1e-04
UniRef50_Q1J0W6 Cluster: Diguanylate cyclase; n=1; Deinococcus g... 48 2e-04
UniRef50_P31129 Cluster: Uncharacterized protein ydeH; n=14; Ent... 48 2e-04
UniRef50_A5N771 Cluster: Predicted signal transduction protein c... 48 2e-04
UniRef50_Q1J3X3 Cluster: Diguanylate cyclase; n=1; Deinococcus g... 48 3e-04
UniRef50_Q0ET30 Cluster: GGDEF domain; n=1; Thermoanaerobacter e... 48 3e-04
UniRef50_A7HJP9 Cluster: Diguanylate cyclase; n=1; Fervidobacter... 48 3e-04
UniRef50_O66743 Cluster: Putative uncharacterized protein; n=1; ... 47 4e-04
UniRef50_Q2BN01 Cluster: GGDEF domain protein; n=1; Neptuniibact... 47 4e-04
UniRef50_A4MAF1 Cluster: Diguanylate cyclase; n=1; Petrotoga mob... 47 4e-04
UniRef50_A0Y5R8 Cluster: GGDEF domain protein; n=1; Alteromonada... 47 4e-04
UniRef50_A0XY92 Cluster: Putative GGDEF domain membrane protein;... 47 4e-04
UniRef50_Q1MZM1 Cluster: Sensory transduction protein kinase; n=... 47 5e-04
UniRef50_Q8D747 Cluster: FOG: GGDEF domain; n=13; Vibrionales|Re... 40 9e-04
UniRef50_Q9KM29 Cluster: GGDEF family protein; n=14; Vibrio chol... 46 0.001
UniRef50_Q8D3P0 Cluster: GGDEF family protein; n=42; Gammaproteo... 46 0.001
UniRef50_Q6D297 Cluster: Putative membrane protein; n=1; Pectoba... 46 0.001
UniRef50_Q15QF9 Cluster: Diguanylate cyclase/phosphodiesterase p... 46 0.001
UniRef50_A6W118 Cluster: Diguanylate cyclase precursor; n=1; Mar... 45 0.002
UniRef50_A1S750 Cluster: GGDEF family protein; n=6; Shewanella|R... 45 0.002
UniRef50_A0LG65 Cluster: Response regulator receiver modulated d... 45 0.002
UniRef50_Q3ADI8 Cluster: GGDEF domain protein; n=1; Carboxydothe... 45 0.002
UniRef50_Q2BLA2 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_Q1YM41 Cluster: Conserved hypothetical membrane protein... 45 0.002
UniRef50_A6FI40 Cluster: Putative GGDEF family protein; n=1; Mor... 45 0.002
UniRef50_A6ANT2 Cluster: Putative signal transduction protein; n... 45 0.002
UniRef50_A4M892 Cluster: Diguanylate cyclase with GAF sensor; n=... 45 0.002
UniRef50_A0X378 Cluster: Diguanylate cyclase; n=1; Shewanella pe... 45 0.002
UniRef50_Q3M5I8 Cluster: Putative diguanylate cyclase (GGDEF dom... 44 0.003
UniRef50_A6FBK3 Cluster: Sensory transduction protein kinase; n=... 44 0.003
UniRef50_A4W9G8 Cluster: Diguanylate cyclase; n=1; Enterobacter ... 44 0.003
UniRef50_A0IQI9 Cluster: Diguanylate cyclase; n=1; Serratia prot... 44 0.003
UniRef50_Q8Y595 Cluster: Lmo2174 protein; n=12; Listeria|Rep: Lm... 44 0.004
UniRef50_Q6FED5 Cluster: Putative uncharacterized protein; n=2; ... 44 0.004
UniRef50_A5VMQ1 Cluster: Diguanylate cyclase; n=1; Lactobacillus... 44 0.004
UniRef50_A4M3Q6 Cluster: Response regulator receiver modulated d... 44 0.004
UniRef50_A3YC66 Cluster: Putative uncharacterized protein; n=1; ... 44 0.004
UniRef50_Q47J00 Cluster: PAS:GGDEF; n=1; Dechloromonas aromatica... 44 0.005
UniRef50_A1TXG7 Cluster: Diguanylate cyclase; n=1; Marinobacter ... 44 0.005
UniRef50_A1RLG4 Cluster: Diguanylate cyclase with PAS/PAC sensor... 44 0.005
UniRef50_A1FZE7 Cluster: Diguanylate cyclase; n=1; Stenotrophomo... 44 0.005
UniRef50_Q9KM32 Cluster: GGDEF family protein; n=20; Gammaproteo... 43 0.006
UniRef50_Q7W550 Cluster: Putative uncharacterized protein; n=3; ... 43 0.006
UniRef50_Q4KAN5 Cluster: GGDEF domain protein; n=4; Pseudomonas|... 43 0.006
UniRef50_Q1N5E1 Cluster: GGDEF domain protein; n=1; Oceanobacter... 43 0.006
UniRef50_A7JXY3 Cluster: Ggdef domain protein; n=2; Vibrio sp. E... 43 0.006
UniRef50_A7HKL8 Cluster: Response regulator receiver modulated d... 43 0.006
UniRef50_A6W6S8 Cluster: Diguanylate cyclase/phosphodiesterase; ... 43 0.006
UniRef50_A6T9F4 Cluster: Putative uncharacterized protein; n=1; ... 43 0.006
UniRef50_A5G747 Cluster: Diguanylate cyclase with PAS/PAC sensor... 43 0.006
UniRef50_A3Y4T8 Cluster: Signal transduction protein containing ... 43 0.006
UniRef50_A0XYM4 Cluster: Putative uncharacterized protein; n=1; ... 43 0.006
UniRef50_A0IXU1 Cluster: Diguanylate cyclase; n=1; Shewanella wo... 43 0.006
UniRef50_Q3AB06 Cluster: GGDEF domain protein; n=1; Carboxydothe... 43 0.008
UniRef50_Q20JW7 Cluster: GGDEF domain protein; n=1; uncultured b... 43 0.008
UniRef50_Q1YJ95 Cluster: Diguanylate cyclase family; n=1; Aurant... 43 0.008
UniRef50_A6DA01 Cluster: Diguanylate cyclase; n=1; Caminibacter ... 43 0.008
UniRef50_A0YPB8 Cluster: Regulatory components of sensory transd... 43 0.008
UniRef50_P0AA90 Cluster: Uncharacterized protein yddV; n=24; Ent... 43 0.008
UniRef50_Q9RVP4 Cluster: GGDEF family protein; n=1; Deinococcus ... 42 0.011
UniRef50_Q5DYR4 Cluster: Two component response regulator; n=1; ... 42 0.011
UniRef50_Q15PL7 Cluster: Diguanylate cyclase; n=1; Pseudoalterom... 42 0.011
UniRef50_A4YQK9 Cluster: Putative uncharacterized protein; n=1; ... 42 0.011
UniRef50_A4XG32 Cluster: Diguanylate cyclase/phosphodiesterase; ... 42 0.011
UniRef50_Q8D5C1 Cluster: FOG: GGDEF domain; n=1; Vibrio vulnific... 42 0.015
UniRef50_Q5FJ86 Cluster: Regulator components; n=1; Lactobacillu... 42 0.015
UniRef50_Q488E6 Cluster: GGDEF domain protein; n=1; Colwellia ps... 42 0.015
UniRef50_Q3IKK3 Cluster: Putative uncharacterized protein; n=1; ... 42 0.015
UniRef50_Q30NR9 Cluster: Diguanylate cyclase/phosphodiesterase (... 42 0.015
UniRef50_Q1ZIG1 Cluster: GGDEF family protein; n=1; Psychromonas... 42 0.015
UniRef50_Q12JJ7 Cluster: GGDEF domain precursor; n=1; Shewanella... 42 0.015
UniRef50_A6TGP5 Cluster: Putative uncharacterized protein; n=1; ... 42 0.015
UniRef50_A5UW82 Cluster: Diguanylate cyclase; n=2; Roseiflexus|R... 42 0.015
UniRef50_A4XFJ6 Cluster: Diguanylate cyclase/phosphodiesterase w... 42 0.015
UniRef50_A3Y705 Cluster: GGDEF domain protein; n=2; Oceanospiril... 42 0.015
UniRef50_A3IRT7 Cluster: Peptidase C14, caspase catalytic subuni... 42 0.015
UniRef50_A1SAT2 Cluster: GGDEF domain-like protein; n=1; Shewane... 42 0.015
UniRef50_A0YH39 Cluster: Sensory transduction protein kinase; n=... 42 0.015
UniRef50_Q6N5J0 Cluster: Putative diguanylate cyclase; n=1; Rhod... 42 0.019
UniRef50_Q67KG5 Cluster: Putative uncharacterized protein; n=1; ... 42 0.019
UniRef50_Q5E1H0 Cluster: Putative uncharacterized protein; n=1; ... 42 0.019
UniRef50_Q5E0K8 Cluster: Hypothetical membrane spanning protein;... 42 0.019
UniRef50_Q5E0A0 Cluster: Putative uncharacterized protein; n=1; ... 42 0.019
UniRef50_Q317L8 Cluster: Diguanylate cyclase (GGDEF domain) prec... 42 0.019
UniRef50_Q30UN0 Cluster: Diguanylate cyclase; n=1; Thiomicrospir... 42 0.019
UniRef50_Q2KZ95 Cluster: Putative signaling membrane protein; n=... 42 0.019
UniRef50_Q2BHA0 Cluster: Sensor histidine kinase; n=1; Neptuniib... 42 0.019
UniRef50_Q191P5 Cluster: Diguanylate cyclase; n=2; Desulfitobact... 42 0.019
UniRef50_A6QAR7 Cluster: Signal transduction protein; n=1; Sulfu... 42 0.019
UniRef50_A3Y977 Cluster: Diguanylate cyclase; n=1; Marinomonas s... 42 0.019
UniRef50_A1RLL0 Cluster: Diguanylate cyclase; n=6; Shewanella|Re... 42 0.019
UniRef50_A1GBG0 Cluster: Diguanylate cyclase/phosphodiesterase p... 42 0.019
UniRef50_UPI00015BD21E Cluster: UPI00015BD21E related cluster; n... 41 0.026
UniRef50_Q9KSA6 Cluster: GGDEF family protein; n=19; Vibrio chol... 41 0.026
UniRef50_Q9KS83 Cluster: GGDEF family protein; n=16; Vibrio chol... 41 0.026
UniRef50_Q8UBF5 Cluster: GGDEF family protein; n=1; Agrobacteriu... 41 0.026
UniRef50_Q8D4A5 Cluster: FOG: GGDEF domain; n=2; Vibrio vulnific... 41 0.026
UniRef50_A6X3N7 Cluster: Diguanylate cyclase/phosphodiesterase p... 41 0.026
UniRef50_A6W8F7 Cluster: Diguanylate cyclase; n=1; Kineococcus r... 41 0.026
UniRef50_A6F9D0 Cluster: GGDEF; n=1; Moritella sp. PE36|Rep: GGD... 41 0.026
UniRef50_A5ZRH2 Cluster: Putative uncharacterized protein; n=1; ... 41 0.026
UniRef50_A5HXY9 Cluster: Putative signaling protein; n=4; Clostr... 41 0.026
UniRef50_A4J2L5 Cluster: Diguanylate cyclase with PAS/PAC sensor... 41 0.026
UniRef50_A3XAQ5 Cluster: Putative diguanylate cyclase; n=1; Rose... 41 0.026
UniRef50_A0L914 Cluster: Diguanylate cyclase/phosphodiesterase w... 41 0.026
UniRef50_Q6LUQ8 Cluster: Hypothetical sensory box/GGDEF family p... 41 0.034
UniRef50_Q6LK83 Cluster: Hypothetical GGDEF family protein; n=4;... 41 0.034
UniRef50_Q30R33 Cluster: Diguanylate cyclase; n=1; Thiomicrospir... 41 0.034
UniRef50_Q6REH3 Cluster: Putative uncharacterized protein; n=1; ... 41 0.034
UniRef50_A7HLY2 Cluster: Diguanylate cyclase; n=1; Fervidobacter... 41 0.034
UniRef50_A6WE26 Cluster: Diguanylate cyclase; n=1; Kineococcus r... 41 0.034
UniRef50_A6W0K6 Cluster: Diguanylate cyclase precursor; n=1; Mar... 41 0.034
UniRef50_A6VTA2 Cluster: Diguanylate cyclase; n=2; Marinomonas|R... 41 0.034
UniRef50_A6Q580 Cluster: Putative uncharacterized protein; n=1; ... 41 0.034
UniRef50_A6D0Y4 Cluster: GGDEF family protein; n=1; Vibrio shilo... 41 0.034
UniRef50_A6CU75 Cluster: Response regulator/sensory box protein/... 41 0.034
UniRef50_A5UZP0 Cluster: Response regulator receiver modulated d... 41 0.034
UniRef50_A4SIY9 Cluster: GGDEF domain protein; n=4; Gammaproteob... 41 0.034
UniRef50_A3WK11 Cluster: GGDEF family protein; n=1; Idiomarina b... 41 0.034
UniRef50_A3IX14 Cluster: PAS:GGDEF; n=1; Cyanothece sp. CCY 0110... 41 0.034
UniRef50_A1FTI5 Cluster: Diguanylate cyclase; n=1; Stenotrophomo... 41 0.034
UniRef50_A0WAE9 Cluster: Diguanylate cyclase/phosphodiesterase w... 41 0.034
UniRef50_Q74CL6 Cluster: Sensory box/response regulator; n=2; Ge... 40 0.045
UniRef50_Q5ZX53 Cluster: Two component response regulator with G... 40 0.045
UniRef50_Q5E0N3 Cluster: Sensory transduction protein kinase; n=... 40 0.045
UniRef50_Q30NZ2 Cluster: Diguanylate cyclase; n=1; Thiomicrospir... 40 0.045
UniRef50_O67439 Cluster: Putative uncharacterized protein; n=1; ... 40 0.045
UniRef50_Q7CYR0 Cluster: AGR_C_3108p; n=4; Rhizobium/Agrobacteri... 40 0.045
UniRef50_Q11LE0 Cluster: Diguanylate cyclase precursor; n=1; Mes... 40 0.045
UniRef50_A7GWP0 Cluster: Putative signal transduction protein co... 40 0.045
UniRef50_A6W5C3 Cluster: Diguanylate cyclase/phosphodiesterase p... 40 0.045
UniRef50_A6VW49 Cluster: Diguanylate cyclase/phosphodiesterase; ... 40 0.045
UniRef50_A6VRR9 Cluster: Diguanylate cyclase precursor; n=1; Mar... 40 0.045
UniRef50_A6Q2C3 Cluster: Signal transduction response regulator;... 40 0.045
UniRef50_A6PBF3 Cluster: Diguanylate cyclase precursor; n=1; She... 40 0.045
UniRef50_A6DBD8 Cluster: Diguanylate cyclase/phosphodiesterase; ... 40 0.045
UniRef50_A6D1R5 Cluster: Predicted signal transduction protein c... 40 0.045
UniRef50_A4SQK1 Cluster: GGDEF domain protein; n=2; Aeromonas|Re... 40 0.045
UniRef50_A3Y7B5 Cluster: Putative diguanylate cyclase; n=1; Mari... 40 0.045
UniRef50_A0YNV2 Cluster: Regulatory component of sensory transdu... 40 0.045
UniRef50_A0Y3C8 Cluster: GGDEF domain protein; n=1; Alteromonada... 40 0.045
UniRef50_UPI00015BDE9D Cluster: UPI00015BDE9D related cluster; n... 40 0.059
UniRef50_Q9WXZ0 Cluster: Response regulator; n=3; Thermotoga|Rep... 40 0.059
UniRef50_Q97IS2 Cluster: Diguanylate cyclase/phosphodiesterase d... 40 0.059
UniRef50_Q8R7R3 Cluster: Diguanylate cyclase/phosphodiesterase d... 40 0.059
UniRef50_Q8F244 Cluster: Sensory box/GGDEF family protein; n=16;... 40 0.059
UniRef50_Q8EPA8 Cluster: Hypothetical conserved protein; n=1; Oc... 40 0.059
UniRef50_Q87YJ9 Cluster: GGDEF domain protein; n=2; Pseudomonas ... 40 0.059
UniRef50_Q7MJD0 Cluster: GGDEF family protein; n=1; Vibrio vulni... 40 0.059
UniRef50_Q6LLM3 Cluster: Hipothetical sensory box/GGDEF family p... 40 0.059
UniRef50_Q5ZXI7 Cluster: GGDEF domain protein; n=4; Legionella p... 40 0.059
UniRef50_Q5LPK8 Cluster: GGDEF domain protein; n=1; Silicibacter... 40 0.059
UniRef50_Q31E25 Cluster: Diguanylate cyclase/phosphodiesterase (... 40 0.059
UniRef50_Q2SCC3 Cluster: Predicted signal transduction protein c... 40 0.059
UniRef50_Q7CXP3 Cluster: AGR_C_3960p; n=2; Agrobacterium tumefac... 40 0.059
UniRef50_Q1ZFR1 Cluster: Putative uncharacterized protein; n=1; ... 40 0.059
UniRef50_Q1VBP0 Cluster: GGDEF family protein; n=1; Vibrio algin... 40 0.059
UniRef50_Q1PXY5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.059
UniRef50_Q1GHU8 Cluster: Putative uncharacterized protein; n=1; ... 40 0.059
UniRef50_A6WF17 Cluster: Diguanylate cyclase/phosphodiesterase; ... 40 0.059
UniRef50_A6Q2T9 Cluster: Signal transduction response regulator;... 40 0.059
UniRef50_A6PGI1 Cluster: Diguanylate cyclase; n=1; Shewanella se... 40 0.059
UniRef50_A6DDL0 Cluster: Signaling repeat/GGDEF domain/EAL domai... 40 0.059
UniRef50_A6AJT5 Cluster: Ggdef domain protein; n=2; Vibrio harve... 40 0.059
UniRef50_A5ZSI1 Cluster: Putative uncharacterized protein; n=1; ... 40 0.059
UniRef50_A5NB64 Cluster: Diguanylate cyclase; n=3; Shewanella ba... 40 0.059
UniRef50_A5IN19 Cluster: Diguanylate cyclase; n=2; Thermotoga|Re... 40 0.059
UniRef50_A4G7R2 Cluster: Putative uncharacterized protein; n=1; ... 40 0.059
UniRef50_A3YGX3 Cluster: Sensory box protein; n=2; Marinomonas s... 40 0.059
UniRef50_A3Y1G9 Cluster: Sensory transduction/ GGDEF family prot... 40 0.059
UniRef50_A1TXD1 Cluster: Diguanylate cyclase; n=1; Marinobacter ... 40 0.059
UniRef50_A0KN72 Cluster: GGDEF, putative; n=1; Aeromonas hydroph... 40 0.059
UniRef50_Q8FW47 Cluster: GGDEF domain protein; n=2; Brucella|Rep... 40 0.078
UniRef50_Q88UG5 Cluster: Protein containing diguanylate cyclase/... 40 0.078
UniRef50_Q6LS76 Cluster: Putative uncharacterized protein; n=2; ... 40 0.078
UniRef50_Q6ARU5 Cluster: Putative uncharacterized protein; n=1; ... 40 0.078
UniRef50_Q46U34 Cluster: GGDEF; n=3; Cupriavidus necator|Rep: GG... 40 0.078
UniRef50_Q3SFR8 Cluster: Putative diguanylate cyclase (GGDEF dom... 40 0.078
UniRef50_Q3IH17 Cluster: Putative uncharacterized protein; n=2; ... 40 0.078
UniRef50_Q31JQ5 Cluster: Diguanylate cyclase precursor; n=1; Thi... 40 0.078
UniRef50_Q9L4F1 Cluster: YkoW protein; n=14; cellular organisms|... 40 0.078
UniRef50_Q21LK5 Cluster: GGDEF domain; n=1; Saccharophagus degra... 40 0.078
UniRef50_Q21FP0 Cluster: GGDEF domain; n=1; Saccharophagus degra... 40 0.078
UniRef50_Q0RSL8 Cluster: Putative signaling protein with a PAS d... 40 0.078
UniRef50_A6VRJ6 Cluster: Diguanylate cyclase; n=1; Marinomonas s... 40 0.078
UniRef50_A6TIC3 Cluster: Putative uncharacterized protein; n=1; ... 40 0.078
UniRef50_A6DD54 Cluster: Diguanylate cyclase; n=1; Caminibacter ... 40 0.078
UniRef50_A6CYZ9 Cluster: GGDEF family protein; n=1; Vibrio shilo... 40 0.078
UniRef50_A4EFX5 Cluster: Periplasmic sensor diguanylate cyclase;... 40 0.078
UniRef50_A3XXF2 Cluster: GGDEF family protein; n=2; Vibrionales|... 40 0.078
UniRef50_A3WMF3 Cluster: PAS:GGDEF protein; n=1; Idiomarina balt... 40 0.078
UniRef50_A1SZ67 Cluster: Diguanylate cyclase; n=1; Psychromonas ... 40 0.078
UniRef50_A1FRV4 Cluster: Diguanylate cyclase with PAS/PAC sensor... 40 0.078
UniRef50_A0Y4L7 Cluster: Hypothetical GGDEF family protein; n=1;... 40 0.078
UniRef50_A0VLS6 Cluster: Diguanylate cyclase; n=1; Dinoroseobact... 40 0.078
UniRef50_A0JR44 Cluster: Diguanylate cyclase/phosphodiesterase; ... 40 0.078
UniRef50_A0J050 Cluster: Diguanylate cyclase precursor; n=1; She... 40 0.078
UniRef50_Q9KNI8 Cluster: GGDEF family protein; n=30; Vibrionales... 39 0.10
UniRef50_Q97IS4 Cluster: Diguanylate cyclase/phosphodiesterase d... 39 0.10
UniRef50_Q8YEZ6 Cluster: Diguanylate cyclase/phosphodiesterase d... 39 0.10
UniRef50_Q87PR0 Cluster: GGDEF family protein; n=7; Vibrio|Rep: ... 39 0.10
UniRef50_Q7UWZ9 Cluster: Putative uncharacterized protein; n=1; ... 39 0.10
UniRef50_Q7UJ25 Cluster: Putative uncharacterized protein; n=1; ... 39 0.10
UniRef50_Q749W0 Cluster: GGDEF domain protein; n=2; Geobacter|Re... 39 0.10
UniRef50_Q5QW01 Cluster: Intracellular signaling protein; n=1; I... 39 0.10
UniRef50_Q5QVZ0 Cluster: Signaling protein with membrane-bound s... 39 0.10
UniRef50_Q5QUY1 Cluster: Signaling protein with a ligand-binding... 39 0.10
UniRef50_Q5E662 Cluster: Sensory box/GGDEF family protein; n=1; ... 39 0.10
UniRef50_Q5E5K1 Cluster: Putative uncharacterized protein; n=1; ... 39 0.10
UniRef50_Q3ADQ4 Cluster: Response regulator/sensory box protein/... 39 0.10
UniRef50_Q3AAI7 Cluster: GGDEF/GAF/HDIG domain protein; n=1; Car... 39 0.10
UniRef50_Q2RGK1 Cluster: Diguanylate cyclase; n=1; Moorella ther... 39 0.10
UniRef50_Q1J0V3 Cluster: Diguanylate cyclase precursor; n=1; Dei... 39 0.10
UniRef50_Q1FEJ5 Cluster: GGDEF domain; n=1; Clostridium phytofer... 39 0.10
UniRef50_Q08Z79 Cluster: Ggdef family protein; n=2; Cystobacteri... 39 0.10
UniRef50_A6VVU2 Cluster: Response regulator receiver modulated d... 39 0.10
UniRef50_A6T3X3 Cluster: Uncharacterized conserved protein; n=1;... 39 0.10
UniRef50_A6Q8K7 Cluster: Signal transduction response regulator;... 39 0.10
UniRef50_A6EY51 Cluster: Response regulator receiver domain prot... 39 0.10
UniRef50_A6EV43 Cluster: Sensory box protein/GGDEF domain protei... 39 0.10
UniRef50_A6AKL5 Cluster: Ggdef family protein; n=2; Vibrio harve... 39 0.10
UniRef50_A5V1I0 Cluster: Diguanylate cyclase; n=2; Roseiflexus|R... 39 0.10
UniRef50_A4YPK6 Cluster: Putative diguanylate cyclase (GGDEF) wi... 39 0.10
UniRef50_A4BD76 Cluster: GGDEF domain protein; n=1; Reinekea sp.... 39 0.10
UniRef50_A4B0P2 Cluster: Putative uncharacterized protein; n=1; ... 39 0.10
UniRef50_A3I7J9 Cluster: Sensory box/GGDEF domain protein; n=1; ... 39 0.10
UniRef50_A0WAT7 Cluster: Diguanylate cyclase precursor; n=1; Geo... 39 0.10
UniRef50_A0L7G7 Cluster: Response regulator receiver modulated d... 39 0.10
UniRef50_A0KKN7 Cluster: GGDEF family protein, putative; n=2; Ae... 39 0.10
UniRef50_P46139 Cluster: Inner membrane protein yfiN; n=28; Ente... 39 0.10
UniRef50_P77302 Cluster: Uncharacterized protein ydaM; n=27; Ent... 39 0.10
UniRef50_UPI00015ADE70 Cluster: hypothetical protein NEMVEDRAFT_... 39 0.14
UniRef50_Q9RZS0 Cluster: GGDEF family protein; n=2; Deinococcus|... 39 0.14
UniRef50_Q9RWR1 Cluster: GGDEF family protein; n=2; Deinococcus|... 39 0.14
UniRef50_Q92IU9 Cluster: Regulatory components of sensory transd... 39 0.14
UniRef50_Q8FX54 Cluster: GAF/GGDEF domain protein; n=3; Brucella... 39 0.14
UniRef50_Q8DEN6 Cluster: GGDEF domain protein; n=28; Vibrionales... 39 0.14
UniRef50_Q6LN46 Cluster: Putative uncharacterized protein; n=4; ... 39 0.14
UniRef50_Q5SJL9 Cluster: GGDEF domain protein; n=2; Thermus ther... 39 0.14
UniRef50_Q3A272 Cluster: FOG: GGDEF domain protein; n=1; Pelobac... 39 0.14
UniRef50_Q30RR7 Cluster: Diguanylate cyclase (GGDEF domain) with... 39 0.14
UniRef50_Q2SF23 Cluster: Predicted signal transduction protein c... 39 0.14
UniRef50_Q2RGK2 Cluster: Diguanylate cyclase (GGDEF domain) with... 39 0.14
UniRef50_Q2B6Y4 Cluster: Putative uncharacterized protein; n=1; ... 39 0.14
UniRef50_Q2B0G8 Cluster: Diguanylate cyclase; n=1; Bacillus sp. ... 39 0.14
UniRef50_Q21ED1 Cluster: GGDEF domain; n=1; Saccharophagus degra... 39 0.14
UniRef50_Q1ZSN4 Cluster: GGDEF family protein; n=1; Vibrio angus... 39 0.14
UniRef50_Q1ZFH2 Cluster: Regulatory component of sensory transdu... 39 0.14
UniRef50_Q189Q1 Cluster: Putative signaling protein precursor; n... 39 0.14
UniRef50_O86287 Cluster: Putative uncharacterized protein orfC; ... 39 0.14
UniRef50_A7IK32 Cluster: Diguanylate cyclase; n=3; Rhizobiales|R... 39 0.14
UniRef50_A6W5N9 Cluster: Diguanylate cyclase/phosphodiesterase p... 39 0.14
UniRef50_A6UKB6 Cluster: Diguanylate cyclase; n=5; Rhizobiales|R... 39 0.14
UniRef50_A6PAI2 Cluster: Diguanylate cyclase precursor; n=1; She... 39 0.14
UniRef50_A6LSE0 Cluster: Diguanylate cyclase; n=1; Clostridium b... 39 0.14
UniRef50_A6LL34 Cluster: Diguanylate cyclase; n=1; Thermosipho m... 39 0.14
UniRef50_A6LKQ8 Cluster: Diguanylate cyclase; n=1; Thermosipho m... 39 0.14
UniRef50_A6D653 Cluster: PAS:GGDEF; n=1; Vibrio shilonii AK1|Rep... 39 0.14
UniRef50_A5P5B9 Cluster: Diguanylate cyclase/phosphodiesterase w... 39 0.14
UniRef50_A5P3W8 Cluster: Diguanylate cyclase/phosphodiesterase; ... 39 0.14
UniRef50_A4XZR1 Cluster: Diguanylate cyclase; n=12; Pseudomonas|... 39 0.14
UniRef50_A4XQX9 Cluster: Diguanylate cyclase with PAS/PAC sensor... 39 0.14
UniRef50_A4WYI1 Cluster: Putative uncharacterized protein; n=1; ... 39 0.14
UniRef50_A4GA74 Cluster: Putative uncharacterized protein; n=1; ... 39 0.14
UniRef50_A4ESG0 Cluster: Signal transduction protein containing ... 39 0.14
UniRef50_A4CF43 Cluster: Putative uncharacterized protein; n=1; ... 39 0.14
UniRef50_A3ZSM7 Cluster: Putative diguanylate cyclase; n=1; Blas... 39 0.14
UniRef50_A3I8W9 Cluster: Putative uncharacterized protein; n=1; ... 39 0.14
UniRef50_A1U3M3 Cluster: Diguanylate cyclase with PAS/PAC sensor... 39 0.14
UniRef50_A1S668 Cluster: GGDEF domain-like protein; n=1; Shewane... 39 0.14
UniRef50_A0RNJ9 Cluster: Ggdef family protein; n=1; Campylobacte... 39 0.14
UniRef50_A0NV57 Cluster: Putative diguanylate cyclase/phosphodie... 39 0.14
UniRef50_A0KQ72 Cluster: Pas:GGDEF, putative; n=2; Aeromonas|Rep... 39 0.14
UniRef50_UPI00015BD250 Cluster: UPI00015BD250 related cluster; n... 38 0.18
UniRef50_Q9A776 Cluster: GGDEF family protein; n=2; Caulobacter|... 38 0.18
UniRef50_Q98D64 Cluster: Mll4839 protein; n=1; Mesorhizobium lot... 38 0.18
UniRef50_Q897M8 Cluster: Diguanylate cyclase/phosphodiesterase-d... 38 0.18
UniRef50_Q87IQ0 Cluster: GGDEF family protein; n=6; Vibrio|Rep: ... 38 0.18
UniRef50_Q7NRP3 Cluster: Putative uncharacterized protein; n=1; ... 38 0.18
UniRef50_Q5Z3K8 Cluster: Putative uncharacterized protein; n=1; ... 38 0.18
UniRef50_Q484P0 Cluster: Metal-binding diguanylate cyclase (GGDE... 38 0.18
UniRef50_Q2K519 Cluster: Probable urease-associated protein; n=3... 38 0.18
UniRef50_Q2JPE7 Cluster: GGDEF/FHA domain protein; n=2; Synechoc... 38 0.18
UniRef50_O66623 Cluster: Putative uncharacterized protein; n=1; ... 38 0.18
UniRef50_Q3WJ74 Cluster: PAS:GGDEF; n=1; Frankia sp. EAN1pec|Rep... 38 0.18
UniRef50_Q2BMX5 Cluster: GGDEF family protein; n=1; Neptuniibact... 38 0.18
UniRef50_Q2BM12 Cluster: Two-component response regulator; n=1; ... 38 0.18
UniRef50_Q21XK7 Cluster: Response regulator receiver modulated d... 38 0.18
UniRef50_Q1N7J4 Cluster: Putative uncharacterized protein; n=1; ... 38 0.18
UniRef50_Q1EXS6 Cluster: GGDEF precursor; n=1; Clostridium oreml... 38 0.18
UniRef50_Q15V85 Cluster: Diguanylate cyclase; n=1; Pseudoalterom... 38 0.18
UniRef50_Q0HT79 Cluster: Diguanylate cyclase; n=12; Shewanella|R... 38 0.18
UniRef50_Q0A6W8 Cluster: Diguanylate cyclase; n=1; Alkalilimnico... 38 0.18
UniRef50_A6WFE5 Cluster: Diguanylate cyclase precursor; n=1; Kin... 38 0.18
UniRef50_A6Q7G5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.18
UniRef50_A6LR61 Cluster: Diguanylate cyclase; n=1; Clostridium b... 38 0.18
UniRef50_A6DAX5 Cluster: Diguanylate cyclase; n=1; Caminibacter ... 38 0.18
UniRef50_A5KXD2 Cluster: Intracellular signaling protein; n=3; V... 38 0.18
UniRef50_A4XRR3 Cluster: Diguanylate cyclase; n=1; Pseudomonas m... 38 0.18
UniRef50_A4W685 Cluster: Diguanylate cyclase precursor; n=6; Ent... 38 0.18
UniRef50_A4E847 Cluster: Putative uncharacterized protein; n=1; ... 38 0.18
UniRef50_A4C9E8 Cluster: Sensory box/GGDEF domain protein; n=1; ... 38 0.18
UniRef50_A4B6R4 Cluster: Putative response regulator; n=1; Alter... 38 0.18
UniRef50_A3Y0B4 Cluster: Putative uncharacterized protein; n=3; ... 38 0.18
UniRef50_A3WKY3 Cluster: Putative uncharacterized protein; n=1; ... 38 0.18
UniRef50_A3USF1 Cluster: GGDEF family protein; n=2; Vibrionales|... 38 0.18
UniRef50_A3ISZ5 Cluster: Diguanylate cyclase/phosphodiesterase (... 38 0.18
UniRef50_A1W7D1 Cluster: Diguanylate cyclase; n=4; Comamonadacea... 38 0.18
UniRef50_A1TX96 Cluster: Diguanylate cyclase; n=2; Marinobacter|... 38 0.18
UniRef50_A1TWP6 Cluster: Diguanylate cyclase; n=1; Marinobacter ... 38 0.18
UniRef50_A1S4V3 Cluster: GGDEF domain-like protein; n=1; Shewane... 38 0.18
UniRef50_A0YXP0 Cluster: Regulatory component of sensory transdu... 38 0.18
UniRef50_A0YS99 Cluster: Putative diguanylate cyclase/phosphodie... 38 0.18
UniRef50_A0Y0A1 Cluster: GGDEF domain protein; n=1; Alteromonada... 38 0.18
UniRef50_A0LAI5 Cluster: Diguanylate cyclase/phosphodiesterase; ... 38 0.18
UniRef50_A0KQ47 Cluster: Fog: GGDEF domain protein; n=2; Aeromon... 38 0.18
UniRef50_Q7DLB7 Cluster: Uncharacterized membrane protein in llm... 38 0.18
UniRef50_UPI00015C4B30 Cluster: diguanylate cyclase (GGDEF) doma... 38 0.24
UniRef50_UPI0000E0EEC9 Cluster: response regulator/GGDEF domain ... 38 0.24
UniRef50_Q9KN91 Cluster: GGDEF family protein; n=14; Vibrio chol... 38 0.24
UniRef50_Q8EJW5 Cluster: Sensory box protein; n=15; Gammaproteob... 38 0.24
UniRef50_Q89UP9 Cluster: Bll1362 protein; n=5; Bradyrhizobium|Re... 38 0.24
UniRef50_Q87VZ9 Cluster: GGDEF domain protein; n=1; Pseudomonas ... 38 0.24
UniRef50_Q7NT69 Cluster: Probable Two component sensor; n=1; Chr... 38 0.24
UniRef50_Q7M8L5 Cluster: MLL1446 PROTEIN; n=1; Wolinella succino... 38 0.24
UniRef50_Q747B1 Cluster: GGDEF domain/HAMP domain protein; n=1; ... 38 0.24
UniRef50_Q5QW06 Cluster: Signaling protein with a sensor domain ... 38 0.24
UniRef50_Q484M7 Cluster: GGDEF domain protein; n=1; Colwellia ps... 38 0.24
UniRef50_Q47UD6 Cluster: Sensory box sensor/GGDEF/EAL domain pro... 38 0.24
UniRef50_Q313C4 Cluster: Diguanylate cyclase (GGDEF domain) prec... 38 0.24
UniRef50_Q2JG37 Cluster: Diguanylate cyclase (GGDEF domain) with... 38 0.24
UniRef50_Q4IVE4 Cluster: GGDEF; n=1; Azotobacter vinelandii AvOP... 38 0.24
UniRef50_Q41GZ2 Cluster: GGDEF; n=1; Exiguobacterium sibiricum 2... 38 0.24
UniRef50_Q21X90 Cluster: Diguanylate cyclase; n=1; Rhodoferax fe... 38 0.24
UniRef50_Q1YRD6 Cluster: Sensory transduction protein kinase; n=... 38 0.24
UniRef50_Q1Q7M5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.24
UniRef50_Q1Q2M0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.24
UniRef50_Q1EYU9 Cluster: GGDEF; n=1; Clostridium oremlandii OhIL... 38 0.24
UniRef50_A7IBZ4 Cluster: Diguanylate cyclase; n=1; Xanthobacter ... 38 0.24
UniRef50_A7DKJ0 Cluster: Diguanylate cyclase/phosphodiesterase; ... 38 0.24
UniRef50_A7DBJ3 Cluster: Diguanylate cyclase precursor; n=2; Met... 38 0.24
UniRef50_A6W5K5 Cluster: Diguanylate cyclase; n=1; Kineococcus r... 38 0.24
UniRef50_A6W207 Cluster: Diguanylate cyclase precursor; n=2; Mar... 38 0.24
UniRef50_A6TLU0 Cluster: Diguanylate cyclase and metal dependent... 38 0.24
UniRef50_A6FJF7 Cluster: Probable GGDEF family regulatory protei... 38 0.24
UniRef50_A6FCH2 Cluster: GGDEF domain protein; n=1; Moritella sp... 38 0.24
UniRef50_A6F6I7 Cluster: Hypothetical GGDEF domain family protei... 38 0.24
UniRef50_A6DF02 Cluster: Ggdef family protein; n=1; Caminibacter... 38 0.24
UniRef50_A6CW10 Cluster: Diguanylate cyclase; n=1; Vibrio shilon... 38 0.24
UniRef50_A6CIW9 Cluster: Sensory box protein/GGDEF domain protei... 38 0.24
UniRef50_A5I149 Cluster: Putative signaling protein; n=4; Clostr... 38 0.24
UniRef50_A4JSJ2 Cluster: Diguanylate cyclase precursor; n=2; Bur... 38 0.24
UniRef50_A4BSX0 Cluster: Putative diguanylate cyclase; n=1; Nitr... 38 0.24
UniRef50_A4B4A5 Cluster: Response regulator; n=1; Alteromonas ma... 38 0.24
UniRef50_A4AY99 Cluster: Putative diguanylate cyclase/phosphodie... 38 0.24
UniRef50_A3ZNL6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.24
UniRef50_A3Y765 Cluster: Sensory box sensor/GGDEF/EAL domain pro... 38 0.24
UniRef50_A3WG79 Cluster: Putative uncharacterized protein; n=3; ... 38 0.24
UniRef50_A3QDF4 Cluster: Diguanylate cyclase precursor; n=1; She... 38 0.24
UniRef50_A3JH23 Cluster: Putative uncharacterized protein; n=1; ... 38 0.24
UniRef50_A3DC33 Cluster: Metal dependent phosphohydrolase; n=1; ... 38 0.24
UniRef50_A1SY47 Cluster: Diguanylate cyclase precursor; n=1; Psy... 38 0.24
UniRef50_A1SWM8 Cluster: Diguanylate cyclase; n=1; Psychromonas ... 38 0.24
UniRef50_A1FUR0 Cluster: Diguanylate cyclase; n=1; Stenotrophomo... 38 0.24
UniRef50_A1ATS4 Cluster: Diguanylate cyclase; n=1; Pelobacter pr... 38 0.24
UniRef50_A0YIC8 Cluster: PleD-like protein; n=1; Lyngbya sp. PCC... 38 0.24
UniRef50_A0YCW0 Cluster: Signaling protein with a acyltransferas... 38 0.24
UniRef50_A0XYV2 Cluster: Putative two-component response regulat... 38 0.24
UniRef50_A0J0M4 Cluster: Diguanylate cyclase precursor; n=2; She... 38 0.24
UniRef50_UPI00015B8969 Cluster: UPI00015B8969 related cluster; n... 38 0.32
UniRef50_Q9RRJ2 Cluster: GGDEF family protein; n=1; Deinococcus ... 38 0.32
UniRef50_Q9I594 Cluster: Putative uncharacterized protein; n=6; ... 38 0.32
UniRef50_Q98LY1 Cluster: Mlr0825 protein; n=1; Mesorhizobium lot... 38 0.32
UniRef50_Q8PME3 Cluster: Putative uncharacterized protein XAC148... 38 0.32
UniRef50_Q893I5 Cluster: Signaling protein; n=1; Clostridium tet... 38 0.32
UniRef50_Q67JR0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.32
UniRef50_Q30TM0 Cluster: Diguanylate cyclase/phosphodiesterase; ... 38 0.32
UniRef50_Q2RGJ9 Cluster: Diguanylate cyclase; n=1; Moorella ther... 38 0.32
UniRef50_Q2KWG2 Cluster: Putative signaling protein; n=1; Bordet... 38 0.32
UniRef50_Q2C6N0 Cluster: Putative uncharacterized protein; n=2; ... 38 0.32
UniRef50_Q2AI55 Cluster: GGDEF; n=1; Halothermothrix orenii H 16... 38 0.32
UniRef50_Q18Y32 Cluster: Diguanylate cyclase/phosphodiesterase; ... 38 0.32
UniRef50_Q15WC9 Cluster: Diguanylate cyclase/phosphodiesterase p... 38 0.32
UniRef50_Q0G5V9 Cluster: Putative uncharacterized protein; n=1; ... 38 0.32
UniRef50_Q0G275 Cluster: Diguanylate cyclase; n=1; Fulvimarina p... 38 0.32
UniRef50_Q0G1R3 Cluster: Periplasmic sensor diguanylate cyclase;... 38 0.32
UniRef50_Q0B0Y4 Cluster: Putative PAS/PAC sensor protein; n=1; S... 38 0.32
UniRef50_Q0AIF6 Cluster: Diguanylate cyclase; n=2; Nitrosomonas|... 38 0.32
UniRef50_A7MG97 Cluster: Putative uncharacterized protein; n=2; ... 38 0.32
UniRef50_A6W4Z3 Cluster: Diguanylate cyclase with PAS/PAC sensor... 38 0.32
UniRef50_A6TMF8 Cluster: Diguanylate cyclase; n=1; Alkaliphilus ... 38 0.32
UniRef50_A6SYG6 Cluster: Diguanylate cyclase; n=2; Burkholderial... 38 0.32
UniRef50_A6Q5K7 Cluster: Signal transduction response regulator;... 38 0.32
UniRef50_A6LN72 Cluster: Diguanylate cyclase; n=2; cellular orga... 38 0.32
UniRef50_A6LJN4 Cluster: Response regulator receiver modulated d... 38 0.32
UniRef50_A6AN88 Cluster: Putative sensory box/ggdef family prote... 38 0.32
UniRef50_A5IA33 Cluster: Sensory box protein; n=4; Legionella pn... 38 0.32
UniRef50_A5G157 Cluster: Diguanylate cyclase; n=1; Acidiphilium ... 38 0.32
UniRef50_A4WA59 Cluster: Diguanylate cyclase/phosphodiesterase p... 38 0.32
UniRef50_A4BK52 Cluster: GGDEF domain protein; n=1; Reinekea sp.... 38 0.32
UniRef50_A3YDC6 Cluster: Diguanylate cyclase (GGDEF domain) with... 38 0.32
UniRef50_A1WXR7 Cluster: Diguanylate cyclase/phosphodiesterase w... 38 0.32
UniRef50_A1WAF5 Cluster: Diguanylate cyclase with PAS/PAC sensor... 38 0.32
UniRef50_A1S8M7 Cluster: GGDEF domain-like protein; n=1; Shewane... 38 0.32
UniRef50_A1IAZ1 Cluster: Response regulator receiver protein; n=... 38 0.32
UniRef50_A0H7U8 Cluster: Diguanylate cyclase; n=1; Comamonas tes... 38 0.32
UniRef50_A0G8F5 Cluster: Diguanylate cyclase; n=1; Burkholderia ... 38 0.32
UniRef50_Q9RYX3 Cluster: GGDEF family protein; n=2; Deinococcus ... 37 0.42
UniRef50_Q9RYH1 Cluster: GGDEF family protein; n=1; Deinococcus ... 37 0.42
UniRef50_Q9KTK2 Cluster: GGDEF family protein; n=29; Vibrionales... 37 0.42
UniRef50_Q9AA66 Cluster: Sensory box/GGDEF family protein; n=1; ... 37 0.42
UniRef50_Q92UD8 Cluster: Putative uncharacterized protein SMb209... 37 0.42
UniRef50_Q8D6L3 Cluster: FOG: GGDEF domain; n=2; Vibrio vulnific... 37 0.42
UniRef50_Q89G51 Cluster: Bll6496 protein; n=2; Bradyrhizobium ja... 37 0.42
UniRef50_Q7MSI2 Cluster: Putative uncharacterized protein; n=1; ... 37 0.42
UniRef50_Q7MRX3 Cluster: Putative uncharacterized protein; n=2; ... 37 0.42
UniRef50_Q73K37 Cluster: GGDEF domain protein; n=1; Treponema de... 37 0.42
UniRef50_Q6LPC7 Cluster: Putative uncharacterized protein; n=7; ... 37 0.42
UniRef50_Q6D4F7 Cluster: Putative signaling protein; n=2; Proteo... 37 0.42
UniRef50_Q5KW50 Cluster: Two-component sensor histidine kinase; ... 37 0.42
UniRef50_Q46NC3 Cluster: PAS:GGDEF; n=1; Ralstonia eutropha JMP1... 37 0.42
UniRef50_Q31GI5 Cluster: Diguanylate cyclase (GGDEF domain) prec... 37 0.42
UniRef50_Q30QH0 Cluster: Diguanylate cyclase; n=1; Thiomicrospir... 37 0.42
UniRef50_Q2W1Z2 Cluster: Hypothetical 1041 kDa protein in hypE 3... 37 0.42
UniRef50_Q2SN60 Cluster: Predicted signal transduction protein c... 37 0.42
UniRef50_Q2SD41 Cluster: Response regulator containing a CheY-li... 37 0.42
UniRef50_Q3CFI9 Cluster: PAS:GGDEF; n=1; Thermoanaerobacter etha... 37 0.42
UniRef50_Q2BPL4 Cluster: Signal transduction histidine kinase; n... 37 0.42
UniRef50_Q2BLZ2 Cluster: GGDEF protein; n=1; Neptuniibacter caes... 37 0.42
UniRef50_Q2BKH4 Cluster: ATP-binding region, ATPase-like:Histidi... 37 0.42
UniRef50_Q1WTG6 Cluster: Response regulator; n=1; Lactobacillus ... 37 0.42
UniRef50_Q1IV91 Cluster: Diguanylate cyclase precursor; n=1; Aci... 37 0.42
UniRef50_Q1IRY3 Cluster: Diguanylate cyclase; n=1; Acidobacteria... 37 0.42
UniRef50_Q18WH7 Cluster: Diguanylate cyclase; n=2; Desulfitobact... 37 0.42
UniRef50_Q18SZ2 Cluster: Diguanylate cyclase precursor; n=2; Des... 37 0.42
UniRef50_Q15Y82 Cluster: Diguanylate cyclase/phosphodiesterase; ... 37 0.42
UniRef50_Q084C8 Cluster: Diguanylate cyclase precursor; n=2; She... 37 0.42
UniRef50_A7II87 Cluster: Diguanylate cyclase; n=1; Xanthobacter ... 37 0.42
UniRef50_A7HLN1 Cluster: Diguanylate cyclase; n=1; Fervidobacter... 37 0.42
UniRef50_A6T018 Cluster: Signal transduction protein; n=3; Oxalo... 37 0.42
UniRef50_A6Q5E5 Cluster: Putative uncharacterized protein; n=1; ... 37 0.42
UniRef50_A6Q525 Cluster: Signal transduction response regulator;... 37 0.42
UniRef50_A6Q2U9 Cluster: Signal transduction response regulator;... 37 0.42
UniRef50_A6PJG1 Cluster: Diguanylate cyclase with PAS/PAC sensor... 37 0.42
UniRef50_A6PCY2 Cluster: Diguanylate cyclase precursor; n=1; She... 37 0.42
UniRef50_A6GB67 Cluster: Diguanylate cyclase; n=1; Plesiocystis ... 37 0.42
UniRef50_A6FDJ0 Cluster: Putative uncharacterized protein; n=1; ... 37 0.42
UniRef50_A6D7M2 Cluster: GGDEF family protein; n=1; Vibrio shilo... 37 0.42
UniRef50_A6CUS6 Cluster: Hypothetical FOG: GGDEF domain; n=1; Vi... 37 0.42
UniRef50_A5P728 Cluster: GGDEF domain protein; n=1; Erythrobacte... 37 0.42
UniRef50_A5NUC4 Cluster: Diguanylate cyclase; n=3; Alphaproteoba... 37 0.42
UniRef50_A5FPU8 Cluster: Diguanylate cyclase and metal dependent... 37 0.42
UniRef50_A4XQ03 Cluster: Periplasmic/7TM domain sensor diguanyla... 37 0.42
UniRef50_A4LZ36 Cluster: Diguanylate cyclase with PAS/PAC sensor... 37 0.42
UniRef50_A4FHX8 Cluster: Histidine kinase/response regulator hyb... 37 0.42
UniRef50_A4EZV7 Cluster: Putative uncharacterized protein; n=1; ... 37 0.42
UniRef50_A4EWF4 Cluster: Putative uncharacterized protein; n=1; ... 37 0.42
UniRef50_A4BI17 Cluster: Putative uncharacterized protein; n=1; ... 37 0.42
UniRef50_A4BFL1 Cluster: Diguanylate cyclase; n=1; Reinekea sp. ... 37 0.42
UniRef50_A4A4X4 Cluster: GGDEF family protein; n=1; Congregibact... 37 0.42
UniRef50_A3UKW5 Cluster: Sensory box/GGDEF family protein; n=1; ... 37 0.42
UniRef50_A3M9Z0 Cluster: Putative domain GGDEF protein; n=1; Aci... 37 0.42
UniRef50_A3JKV1 Cluster: Diguanylate cyclase; n=1; Marinobacter ... 37 0.42
UniRef50_A3IYQ8 Cluster: Putative diguanylate cyclase; n=1; Cyan... 37 0.42
UniRef50_A3IMW4 Cluster: Regulatory components of sensory transd... 37 0.42
UniRef50_A3EWF3 Cluster: Putative uncharacterized protein; n=1; ... 37 0.42
UniRef50_A3DEY5 Cluster: Diguanylate cyclase with GAF sensor; n=... 37 0.42
UniRef50_A2U6S8 Cluster: Diguanylate cyclase; n=1; Bacillus coag... 37 0.42
UniRef50_A1WC90 Cluster: Diguanylate cyclase precursor; n=1; Aci... 37 0.42
UniRef50_A1TL83 Cluster: Diguanylate cyclase with PAS/PAC sensor... 37 0.42
UniRef50_A1SX34 Cluster: Diguanylate cyclase/phosphodiesterase w... 37 0.42
UniRef50_A1SVZ1 Cluster: Diguanylate cyclase precursor; n=1; Psy... 37 0.42
UniRef50_A0Y571 Cluster: Sensory box/GGDEF family protein; n=1; ... 37 0.42
UniRef50_A0Y3B7 Cluster: Response regulator containing a CheY-li... 37 0.42
UniRef50_A0XYT9 Cluster: Diguanylate cyclase; n=1; Alteromonadal... 37 0.42
UniRef50_A0Q289 Cluster: GGDEF domain protein, putative; n=1; Cl... 37 0.42
UniRef50_A0KSC3 Cluster: Diguanylate cyclase; n=3; Shewanella|Re... 37 0.42
UniRef50_A0HAQ9 Cluster: Diguanylate cyclase; n=2; Comamonadacea... 37 0.42
UniRef50_A0GHH3 Cluster: Diguanylate cyclase/phosphodiesterase; ... 37 0.42
UniRef50_A0FZI0 Cluster: Diguanylate cyclase precursor; n=1; Bur... 37 0.42
UniRef50_Q8EXH2 Cluster: GGDEF family protein; n=7; Leptospira|R... 37 0.55
UniRef50_Q8D986 Cluster: GGDEF domain; n=2; Vibrio vulnificus|Re... 37 0.55
UniRef50_Q8D4L4 Cluster: FOG: GGDEF domain; n=4; Vibrio|Rep: FOG... 37 0.55
UniRef50_Q89W02 Cluster: Bll0891 protein; n=11; Bradyrhizobiacea... 37 0.55
UniRef50_Q6D0E8 Cluster: Putative exported protein; n=4; Enterob... 37 0.55
UniRef50_Q5R0Q8 Cluster: Signaling protein with a GGDEF domain; ... 37 0.55
UniRef50_Q5KZY8 Cluster: Hypothetical conserved protein; n=1; Ge... 37 0.55
UniRef50_Q5FSB4 Cluster: Sensory box/GGDEF family protein; n=1; ... 37 0.55
UniRef50_Q5E7A5 Cluster: Diguanylate cyclase/phosphodiesterase d... 37 0.55
UniRef50_Q3A1L9 Cluster: FOG: GGDEF domain containing protein; n... 37 0.55
UniRef50_Q30P45 Cluster: Diguanylate cyclase; n=1; Thiomicrospir... 37 0.55
UniRef50_Q41HW4 Cluster: GGDEF; n=1; Exiguobacterium sibiricum 2... 37 0.55
UniRef50_Q41F47 Cluster: GGDEF precursor; n=1; Exiguobacterium s... 37 0.55
UniRef50_Q3E077 Cluster: GGDEF; n=2; Chloroflexus|Rep: GGDEF - C... 37 0.55
UniRef50_Q21XV0 Cluster: Diguanylate cyclase; n=1; Rhodoferax fe... 37 0.55
UniRef50_Q217Z3 Cluster: Diguanylate cyclase/phosphodiesterase (... 37 0.55
UniRef50_Q1PZC0 Cluster: Conserved hypothetical signal transduct... 37 0.55
>UniRef50_P75801 Cluster: Uncharacterized membrane protein yliF;
n=21; Enterobacteriaceae|Rep: Uncharacterized membrane
protein yliF - Escherichia coli (strain K12)
Length = 442
Score = 229 bits (561), Expect = 4e-59
Identities = 114/129 (88%), Positives = 116/129 (89%)
Frame = -2
Query: 641 GLYVFAYKKDVYLRVCTLIIFFAALVAVISGAQLPLSGTQSD*SCIVEKEAIINNHFERV 462
GLYVFAYKKDVYLRVCTLIIFFAALVAVISGA + IVEKEAIINNHFERV
Sbjct: 214 GLYVFAYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERV 273
Query: 461 LDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKN 282
LDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKN
Sbjct: 274 LDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKN 333
Query: 281 INEHFGHLL 255
IN+ FGHLL
Sbjct: 334 INDTFGHLL 342
Score = 175 bits (426), Expect = 9e-43
Identities = 86/91 (94%), Positives = 86/91 (94%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQ 94
T GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQ
Sbjct: 337 TFGHLLGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQ 396
Query: 93 VGSINLSTSIGVAHSNECPTVERLKMLADER 1
VGSINLSTSIGVAHSNECPTVERLKMLADER
Sbjct: 397 VGSINLSTSIGVAHSNECPTVERLKMLADER 427
>UniRef50_UPI00015C5737 Cluster: hypothetical protein CKO_01565;
n=1; Citrobacter koseri ATCC BAA-895|Rep: hypothetical
protein CKO_01565 - Citrobacter koseri ATCC BAA-895
Length = 303
Score = 50.4 bits (115), Expect = 4e-05
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Frame = -2
Query: 506 IVEKEAIINNHFERVLDGGLFFSAADVK-KLYSMYNSAFLDDLTKAMGRK----SFDEDL 342
I EK + ++HF+R + L F++A + K+Y + + +D LT GR+ SFD L
Sbjct: 100 IAEKRSE-DHHFDRFQEALLAFTSAVMDYKIYLLNIRSNMDILTGLPGRRVLDESFDRQL 158
Query: 341 KALPEKGGYLCLFDVDKFKNINEHFGHLL 255
YL LFD+D+FK +N+++GHL+
Sbjct: 159 IDAQPLNLYLLLFDIDRFKLVNDNYGHLV 187
>UniRef50_Q87K30 Cluster: GGDEF family protein; n=3; Vibrio|Rep:
GGDEF family protein - Vibrio parahaemolyticus
Length = 363
Score = 49.6 bits (113), Expect = 7e-05
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTL--EELLSILKEIVHFQVGS 85
AGD VL ++ K LK + +D YR GGDEFAV+ + EE + + V +
Sbjct: 264 AGDTVLCEIAKRLKD-MNIDSFSTYRMGGDEFAVVIESSDVDAEEAKKHIHSVFDTPVLN 322
Query: 84 IN----LSTSIGVAH-SNECPTVERLKMLADER 1
N LSTSIGVAH ++ V+ L +AD+R
Sbjct: 323 ANNVSSLSTSIGVAHYPSDSDNVDFLISIADKR 355
>UniRef50_A6PFY8 Cluster: Diguanylate cyclase; n=1; Shewanella
sediminis HAW-EB3|Rep: Diguanylate cyclase - Shewanella
sediminis HAW-EB3
Length = 413
Score = 49.2 bits (112), Expect = 1e-04
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Frame = -2
Query: 590 LIIFFAALVAVISGAQLPLSGTQSD*SCIVEK--EAIINNHFERVLDGGLFFSAADVKKL 417
+II + + + S L G SD + + +++ F + L L S A + L
Sbjct: 168 IIILLSFFITIFSALILLFRGHNSDQAVYITLLFTSVMFLSFNQALMPALTASMAAILLL 227
Query: 416 YSMYNS----AFLDDLTKAMGRKSFDEDLKALPEKGGY-LCLFDVDKFKNINEHFGH 261
S+ NS AF+D LT+ GR+S + ++K L G Y + + D+D FK+ N+ FGH
Sbjct: 228 ISIINSSHELAFIDQLTEVPGRRSLEIEIKHL--SGLYTIAMIDIDHFKHFNDTFGH 282
Score = 37.5 bits (83), Expect(2) = 0.064
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GDEVL V +++ +G+++R+GG+EF +I+ G + + L +
Sbjct: 285 GDEVLRLVAQLMNQN--KGRGRIFRYGGEEFTIIFKGKNANQCMPYLNSL 332
Score = 21.4 bits (43), Expect(2) = 0.064
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 87 SINLSTSIGVAHSNECPTVERLKMLADE 4
S+N++ SIGVA S E + AD+
Sbjct: 367 SVNITISIGVADSVSETIPENVMKAADK 394
>UniRef50_Q1J0W6 Cluster: Diguanylate cyclase; n=1; Deinococcus
geothermalis DSM 11300|Rep: Diguanylate cyclase -
Deinococcus geothermalis (strain DSM 11300)
Length = 349
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLKALP-EKGGYLCLFDVDKFKNINEHFGH 261
A+LD LT R+ FDEDL A E+G +L L D+D+FK +N+ GH
Sbjct: 194 AYLDALTNLHNRRQFDEDLPAFGIEEGTFLLLLDLDRFKALNDSCGH 240
>UniRef50_P31129 Cluster: Uncharacterized protein ydeH; n=14;
Enterobacteriaceae|Rep: Uncharacterized protein ydeH -
Escherichia coli (strain K12)
Length = 296
Score = 48.4 bits (110), Expect = 2e-04
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = -2
Query: 476 HFERVLDGGLFFSAADVK-KLYSMYNSAFLDDLTKAMGRK----SFDEDLKALPEKGGYL 312
HF+ +G L F+AA K+Y + + +D LT GR+ SFD L+ YL
Sbjct: 102 HFDAFQEGLLSFTAALTDYKIYLLTIRSNMDVLTGLPGRRVLDESFDHQLRNAEPLNLYL 161
Query: 311 CLFDVDKFKNINEHFGHLL 255
L D+D+FK +N+ +GHL+
Sbjct: 162 MLLDIDRFKLVNDTYGHLI 180
>UniRef50_A5N771 Cluster: Predicted signal transduction protein
containing a GGDEF domain; n=1; Clostridium kluyveri DSM
555|Rep: Predicted signal transduction protein
containing a GGDEF domain - Clostridium kluyveri DSM 555
Length = 273
Score = 48.0 bits (109), Expect = 2e-04
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = -2
Query: 512 SCIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMYN-SAFLDDLTKAMGRKSFDEDLKA 336
S +V+ A N+ E +L G K+L N SA+ D LT R F DLK
Sbjct: 99 SLLVKGAATRNSAGEIILLSGSINDVTQKKRLEEYINYSAYYDSLTGLPNRILFRNDLKT 158
Query: 335 LPE--KGGYLCLFDVDKFKNINEHFGH 261
+ + K G L D+D FK++N+ FGH
Sbjct: 159 ILDNYKNGALIFIDIDDFKSVNDTFGH 185
>UniRef50_Q1J3X3 Cluster: Diguanylate cyclase; n=1; Deinococcus
geothermalis DSM 11300|Rep: Diguanylate cyclase -
Deinococcus geothermalis (strain DSM 11300)
Length = 336
Score = 47.6 bits (108), Expect = 3e-04
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELL-SILKEIVHFQ-VGS 85
AGDE+L +L++++ D+ YR GGDE++V+ LE + +I + Q G
Sbjct: 226 AGDELLRSFATVLRTRLQQDE-TAYRLGGDEYSVLCAPERLETVRRAIATAVTEVQEAGF 284
Query: 84 INLSTSIGVAHSNECPTVERLKMLADER 1
+ + S+G A E L LADER
Sbjct: 285 LEMDASVGTAVGTEVDDPRALPQLADER 312
>UniRef50_Q0ET30 Cluster: GGDEF domain; n=1; Thermoanaerobacter
ethanolicus X514|Rep: GGDEF domain - Thermoanaerobacter
ethanolicus X514
Length = 145
Score = 47.6 bits (108), Expect = 3e-04
Identities = 20/51 (39%), Positives = 40/51 (78%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIV 103
GD+VL+++ K+L +I +KGK++RFGGDEF +++ L+E +S++++++
Sbjct: 59 GDKVLIEISKML-IEIVKEKGKIFRFGGDEFIILF-HCNLDEAISVIEDVI 107
>UniRef50_A7HJP9 Cluster: Diguanylate cyclase; n=1; Fervidobacterium
nodosum Rt17-B1|Rep: Diguanylate cyclase -
Fervidobacterium nodosum Rt17-B1
Length = 1195
Score = 47.6 bits (108), Expect = 3e-04
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLE--ELLSILKEIVH 100
T GD VL + KILK + D+G V R+GG+EF I E +L ++E +
Sbjct: 1082 TYGHMVGDSVLKNIAKILKEHVR-DEGLVARYGGEEFVGIVYKSKYEAAKLCDTIRENIE 1140
Query: 99 ---FQVGSINLSTSIGVAHSNECPTVERLKMLADER 1
++ ++ SIG+A NE V L LAD+R
Sbjct: 1141 KESLKIFGFRVTISIGMADVNEKENVTELLGLADQR 1176
>UniRef50_O66743 Cluster: Putative uncharacterized protein; n=1;
Aquifex aeolicus|Rep: Putative uncharacterized protein -
Aquifex aeolicus
Length = 246
Score = 47.2 bits (107), Expect = 4e-04
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG--GTLEELLSILKEIVHFQVGSI 82
GD+VL +V +++K + + V R+GGDEF +I G + ++S L++++ + +
Sbjct: 143 GDKVLKRVAELIKKSVRKED-YVIRYGGDEFVIITEAPRGDVLSIMSRLQDVIKIKYKEV 201
Query: 81 NLSTSIGVA-HSNECPTVERLKMLADER 1
++ SIG A N+ +E L ADER
Sbjct: 202 EVTASIGSACFPNDGKELEELIKKADER 229
Score = 34.7 bits (76), Expect = 2.2
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = -2
Query: 428 VKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEK-----GGYLCLF-DVDKFKNINEHF 267
+K L ++ ++D LT RK +E K EK + +F D+D FK +N+ +
Sbjct: 79 IKLLRNLEKRTYIDSLTGVYNRKFLEEIFKLEKEKYRTFRKEFCIIFIDLDNFKEVNDRY 138
Query: 266 GHL 258
GH+
Sbjct: 139 GHM 141
>UniRef50_Q2BN01 Cluster: GGDEF domain protein; n=1; Neptuniibacter
caesariensis|Rep: GGDEF domain protein - Neptuniibacter
caesariensis
Length = 379
Score = 47.2 bits (107), Expect = 4e-04
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Frame = -2
Query: 614 DVYLRVCTLIIFFAALVAVISGAQLPLSGTQSD*SCIVEKEAIINNHFERVLDGGLFFSA 435
+ YL I F L+ ++ L + T + + I+ + F + + GLF SA
Sbjct: 112 EYYLSEAAAIAFTLGLLPILLSFLLRKTYTDAALFASLISALIMLSWFNQPMISGLFVSA 171
Query: 434 ADVKKLYSM----YNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHF 267
+ + S+ Y AF+D+LT R++ + L L +K L + D+D FK N+ +
Sbjct: 172 SLIALAISVVQNSYRMAFIDELTSIPARRALQDKLSTLGKK-YTLAMCDIDHFKKFNDTY 230
Query: 266 GH 261
GH
Sbjct: 231 GH 232
Score = 35.9 bits (79), Expect = 0.96
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GD+VL K+V +Q+ GK YR+GG+EF +++ G E L ++++
Sbjct: 235 GDQVL-KMVAAKLNQVS-GGGKAYRYGGEEFTLVFPGKNEAEALPYIEQL 282
>UniRef50_A4MAF1 Cluster: Diguanylate cyclase; n=1; Petrotoga
mobilis SJ95|Rep: Diguanylate cyclase - Petrotoga
mobilis SJ95
Length = 499
Score = 47.2 bits (107), Expect = 4e-04
Identities = 29/84 (34%), Positives = 45/84 (53%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINL 76
GD +L K ++ + K ++R+GGDEF +I G EE+ SIL+ I N+
Sbjct: 402 GDSLLKKFAQLCVDNLR-KKDNIFRYGGDEFVIILGGVKKEEVYSILERINSKLKQETNV 460
Query: 75 STSIGVAHSNECPTVERLKMLADE 4
+ S GVA+ E ++ L +ADE
Sbjct: 461 TFSAGVAY-GESHEIDSLFNIADE 483
Score = 33.1 bits (72), Expect = 6.8
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = -2
Query: 422 KLYS--MYNSAFLDDLTKAMGRKSFDE---DLKALPEKGGYLCLFDVDKFKNINEHFGH 261
K+Y + A +D LT+ R+S++ +K L + L + D+D FK +N+ +GH
Sbjct: 341 KIYQSLLKKDAQIDSLTEIGNRRSYENYISSIKYLKNQKIALVVLDLDNFKKVNDTYGH 399
>UniRef50_A0Y5R8 Cluster: GGDEF domain protein; n=1; Alteromonadales
bacterium TW-7|Rep: GGDEF domain protein -
Alteromonadales bacterium TW-7
Length = 552
Score = 47.2 bits (107), Expect = 4e-04
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI------VHF 97
+GD++L+ V +++K ++ + G VYR GGDEF + +L EL ++ H
Sbjct: 438 SGDKLLINVTELIKKEL-ANLGDVYRTGGDEFICLCCASSLNELETLADNTTKALNKTHI 496
Query: 96 QVGSI--NLSTSIGVAHSNECPTVERLKMLADER 1
Q+ S G+A S+EC + LADER
Sbjct: 497 QLKQTWPQSGLSFGIASSSECTDYKACFTLADER 530
>UniRef50_A0XY92 Cluster: Putative GGDEF domain membrane protein;
n=2; Alteromonadales|Rep: Putative GGDEF domain membrane
protein - Alteromonadales bacterium TW-7
Length = 344
Score = 47.2 bits (107), Expect = 4e-04
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELL---SILKEIV-----H 100
GD+VL ++ +L+ I + KG V+R GG+EFAVI++ + +E L L+E V +
Sbjct: 227 GDKVLTEIATLLR--ITLAKGYVFRVGGEEFAVIHSFNSKDEALFAAEKLRETVEKTPFN 284
Query: 99 FQVGSINLSTSIGVAHSNECPTVERLKMLAD 7
+ +I L+ SIGVA P++E + + AD
Sbjct: 285 IEGHAIKLTISIGVADYQANPSLESIFIAAD 315
Score = 39.1 bits (87), Expect = 0.10
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = -2
Query: 404 NSAFLDDLTKAMGRKSFDE--DLKALPEKGGYLCLFDVDKFKNINEHFGH 261
N A LD LT A R S + +++ + + YL L D+D FK IN+ FGH
Sbjct: 175 NLALLDPLTGAGNRLSMNHYFEVELVDKTNTYLFLLDLDYFKQINDKFGH 224
>UniRef50_Q1MZM1 Cluster: Sensory transduction protein kinase; n=1;
Oceanobacter sp. RED65|Rep: Sensory transduction protein
kinase - Oceanobacter sp. RED65
Length = 371
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = -2
Query: 407 YNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
Y AF+D+LT GR++ + LK LP K YL + DVD FK N+ GH
Sbjct: 202 YFMAFVDELTGIAGRRALEFKLKTLP-KHYYLAMLDVDHFKKFNDTHGH 249
Score = 43.2 bits (97), Expect = 0.006
Identities = 18/49 (36%), Positives = 32/49 (65%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKE 109
GD+VL V K++ + K YR+GG+EFA+++ G + E+++ L+E
Sbjct: 252 GDDVLRTVAKLISQ---TRQAKAYRYGGEEFALVFKNGAVSEIVACLEE 297
>UniRef50_Q8D747 Cluster: FOG: GGDEF domain; n=13; Vibrionales|Rep:
FOG: GGDEF domain - Vibrio vulnificus
Length = 414
Score = 39.9 bits (89), Expect(2) = 9e-04
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Frame = -1
Query: 234 VVKILKSQIPVDKG--KVYRFGGDEFAVIYTGGTLEELLSILKEI 106
V+K++ S++ + KG KVYR+GG+EF V++ G T +E+ L +I
Sbjct: 288 VLKLVGSRLLLIKGGAKVYRYGGEEFTVVFKGKTSKEVQGYLDDI 332
Score = 37.5 bits (83), Expect = 0.32
Identities = 17/46 (36%), Positives = 28/46 (60%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
AF+D LT+ R++ + D+K L + + + DVD FK N+ +GH
Sbjct: 238 AFIDVLTQLPSRRALEMDVKHLGRRFS-IAMIDVDHFKKFNDTYGH 282
Score = 25.4 bits (53), Expect(2) = 9e-04
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 93 VGSINLSTSIGVAHSNECPTVERLKMLADE 4
+ ++N++ SIGV+ S + ++ LADE
Sbjct: 367 MNTVNVTVSIGVSDSRSSKDPDTIRSLADE 396
>UniRef50_Q9KM29 Cluster: GGDEF family protein; n=14; Vibrio
cholerae|Rep: GGDEF family protein - Vibrio cholerae
Length = 412
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = -2
Query: 407 YNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
Y AF D LT+ GR++ D+DLK + K L + DVD FK N+ +GH
Sbjct: 235 YEMAFNDPLTQIPGRQALDQDLKHIGRK-FTLAMLDVDHFKKFNDTYGH 282
Score = 39.5 bits (88), Expect = 0.078
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GD+VL V L+ +I K +VYR+GG+EF++IY G +E+L ++ +
Sbjct: 285 GDDVLRLVASRLR-EIN-GKARVYRYGGEEFSIIYKGKLAKEVLPFIEAL 332
>UniRef50_Q8D3P0 Cluster: GGDEF family protein; n=42;
Gammaproteobacteria|Rep: GGDEF family protein - Vibrio
vulnificus
Length = 338
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = -2
Query: 425 KKLYSMYNSAFLDDLTKAMGRKSFDEDLKAL--PEKGGYLCLFDVDKFKNINEHFGHL 258
++L + A D L+ R++FD DLKAL ++ L L D+D FK N+++GHL
Sbjct: 170 EQLAEVQRDALFDGLSTLYNRRAFDSDLKALVNAQQNLSLILLDIDHFKTFNDNYGHL 227
>UniRef50_Q6D297 Cluster: Putative membrane protein; n=1;
Pectobacterium atrosepticum|Rep: Putative membrane
protein - Erwinia carotovora subsp. atroseptica
(Pectobacterium atrosepticum)
Length = 307
Score = 45.6 bits (103), Expect = 0.001
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
+F D+LT+ R+ F +LK L K YL + D+D FK IN+ +GH
Sbjct: 148 SFSDELTQLPNRRFFINELKKLEAKTPYLFIIDIDNFKVINDKYGH 193
Score = 33.1 bits (72), Expect = 6.8
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIV 103
GDE+L K IL S+ + R GG+EFA+I GT + + +E++
Sbjct: 196 GDEILSKFGHIL-SRFDNSEVVATRIGGEEFAIILYAGTQDRAEKLAREVL 245
>UniRef50_Q15QF9 Cluster: Diguanylate cyclase/phosphodiesterase
precursor; n=1; Pseudoalteromonas atlantica T6c|Rep:
Diguanylate cyclase/phosphodiesterase precursor -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 666
Score = 45.6 bits (103), Expect = 0.001
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSI---LKEIV----- 103
AGDE+L+KV +ILK+ + V R GGDEF+++ + L I +KE +
Sbjct: 301 AGDEILVKVARILKANVR-SNDIVARLGGDEFSILIKDCPFDNALQIANNIKENIRGLTY 359
Query: 102 HFQVGSINLSTSIGVAHSNECPTVERLKMLAD 7
H++ + +LS SIGVA T L AD
Sbjct: 360 HWEGETFHLSASIGVAPKVHGSTTTELLNSAD 391
Score = 37.1 bits (82), Expect = 0.42
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = -2
Query: 413 SMYNSAFLDDLTKAMGRKSFDEDLKALPEK---GGYLCLFDVDKFKNINEHFGH 261
++++ A D LT+ R++F+ +L + + +LC D+D FK IN+ GH
Sbjct: 246 TLFHQASHDPLTELQNRRAFERNLHEIMDDRRLSYFLCFIDLDYFKTINDTCGH 299
>UniRef50_A6W118 Cluster: Diguanylate cyclase precursor; n=1;
Marinomonas sp. MWYL1|Rep: Diguanylate cyclase precursor
- Marinomonas sp. MWYL1
Length = 384
Score = 45.2 bits (102), Expect = 0.002
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = -2
Query: 419 LYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
L + A+LDD+TK GR++ +E L L K + + DVD FK N+ FGH
Sbjct: 213 LMESHRMAYLDDMTKLPGRRALNEQLVGL-SKYYAIAMVDVDHFKKFNDTFGH 264
Score = 37.9 bits (84), Expect = 0.24
Identities = 20/50 (40%), Positives = 29/50 (58%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GD+VL V LK G+ +RFGG+EF +++ G L E+ IL+ I
Sbjct: 267 GDKVLKSVAAQLKQFS--SPGRAFRFGGEEFTIVFRGKRLSEVDGILELI 314
>UniRef50_A1S750 Cluster: GGDEF family protein; n=6; Shewanella|Rep:
GGDEF family protein - Shewanella amazonensis (strain
ATCC BAA-1098 / SB2B)
Length = 347
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = -2
Query: 425 KKLYSMYNSAFLDDLTKAMGRKSFDEDLK---ALPEKGGYLCLFDVDKFKNINEHFGHLL 255
++L F D LT + R++FD DL AL +G L L D+D FK+ N+++GH L
Sbjct: 176 RRLAESEKDVFFDALTGCLNRRAFDADLAGLLALAPEGCCLILCDIDHFKHFNDNYGHQL 235
>UniRef50_A0LG65 Cluster: Response regulator receiver modulated
diguanylate cyclase; n=1; Syntrophobacter fumaroxidans
MPOB|Rep: Response regulator receiver modulated
diguanylate cyclase - Syntrophobacter fumaroxidans
(strain DSM 10017 / MPOB)
Length = 307
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI-VHF-QVGS 85
AGDE+L+K +L+ I D +R+GGDEF V+ LE+ L + + I +F Q+
Sbjct: 194 AGDELLVKFAAVLRQSIRKDVDTAFRYGGDEFMVLLPYLPLEQALPVAERIRENFGQLLL 253
Query: 84 INLSTSIGVA 55
+ S S+G+A
Sbjct: 254 VPTSLSVGIA 263
>UniRef50_Q3ADI8 Cluster: GGDEF domain protein; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep: GGDEF
domain protein - Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008)
Length = 309
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQ 94
+L AGDE L K+ I+K+ + + KV+RFGG+EF ++ + E+ I + I +
Sbjct: 200 SLGHLAGDEALKKIAGIIKNSVR-KQDKVFRFGGEEFLILLPETSPEKARQIAERIRNSV 258
Query: 93 VGSINLS--TSIGVAH 52
+ LS SIG+ H
Sbjct: 259 ARDLELSLTISIGIGH 274
>UniRef50_Q2BLA2 Cluster: Putative uncharacterized protein; n=1;
Neptuniibacter caesariensis|Rep: Putative
uncharacterized protein - Neptuniibacter caesariensis
Length = 811
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI--------V 103
AGD VL++V KI+++ + + R GG+EFA++ + ++ L + + + +
Sbjct: 694 AGDSVLVEVAKIMEAMLR-ESDMAGRIGGEEFAILLPDTSEDDALILAERLREAIESLEI 752
Query: 102 HFQVGSINLSTSIGVAHSNECPTV 31
+Q ++ L+TSIGVA N+ P +
Sbjct: 753 KYQAHTLKLTTSIGVASLNQMPEI 776
>UniRef50_Q1YM41 Cluster: Conserved hypothetical membrane protein
with GGDEF domain; n=1; Aurantimonas sp. SI85-9A1|Rep:
Conserved hypothetical membrane protein with GGDEF
domain - Aurantimonas sp. SI85-9A1
Length = 390
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = -2
Query: 455 GGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDL-KALPEKGGY-LCLFDVDKFKN 282
G S A + + ++A D LT R++F++ L KAL ++G + L +FD+D FK+
Sbjct: 211 GAFVLSVAYERMARDLRHAAMHDALTGLPNRRAFEQRLEKALQDRGHFALVVFDLDHFKS 270
Query: 281 INEHFGH 261
IN+ +GH
Sbjct: 271 INDRYGH 277
>UniRef50_A6FI40 Cluster: Putative GGDEF family protein; n=1;
Moritella sp. PE36|Rep: Putative GGDEF family protein -
Moritella sp. PE36
Length = 366
Score = 44.8 bits (101), Expect = 0.002
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -2
Query: 425 KKLYSMYNSAFLDDLTKAMGRKSFDEDLKAL-PEKGGYLCLFDVDKFKNINEHFGH 261
+ +S+ + +F+D L R+ + + AL P K + + D+D FKN+N+ +GH
Sbjct: 198 RNAFSLQHMSFIDPLANIYNRRGYQHAIAALIPHKEAAVMILDIDNFKNVNDEYGH 253
>UniRef50_A6ANT2 Cluster: Putative signal transduction protein; n=1;
Vibrio harveyi HY01|Rep: Putative signal transduction
protein - Vibrio harveyi HY01
Length = 441
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = -2
Query: 425 KKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEK--GGYLCLFDVDKFKNINEHFGH 261
K+ + + N A+ D LT + R+ + L AL E+ G + +FD+D FK IN+ +GH
Sbjct: 275 KQRFDLQNEAYTDFLTGLLNRRGLENRLYALKEQQVSGSIAVFDIDFFKAINDTYGH 331
>UniRef50_A4M892 Cluster: Diguanylate cyclase with GAF sensor; n=1;
Petrotoga mobilis SJ95|Rep: Diguanylate cyclase with GAF
sensor - Petrotoga mobilis SJ95
Length = 547
Score = 44.8 bits (101), Expect = 0.002
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVH-FQVGSIN 79
GD+VL+K +++ + + +K +VYR+GGDEF +++TG + E + I++ + +V
Sbjct: 448 GDDVLVKFSQLILNTVR-NKDRVYRYGGDEFVILFTGISTEIGIKIIERLYDVLKVFQPK 506
Query: 78 LSTSIGVAHSNE 43
+S S G++ +E
Sbjct: 507 ISFSAGLSTCDE 518
>UniRef50_A0X378 Cluster: Diguanylate cyclase; n=1; Shewanella
pealeana ATCC 700345|Rep: Diguanylate cyclase -
Shewanella pealeana ATCC 700345
Length = 396
Score = 44.8 bits (101), Expect = 0.002
Identities = 22/50 (44%), Positives = 35/50 (70%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GD+VL V K L S++ GKV+R+GG+EF +++T +E +L +L+EI
Sbjct: 274 GDQVLQLVAKKL-SKVE-GGGKVFRYGGEEFTIVFTNKNIEAVLPLLEEI 321
Score = 34.3 bits (75), Expect = 2.9
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = -2
Query: 419 LYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
L +N A+ D+LT R+S + +L K L + D+D FK N+ +GH
Sbjct: 220 LVRSHNLAYRDELTGLASRRSLNTLAHSL-NKHYCLAMVDIDHFKKFNDTYGH 271
>UniRef50_Q3M5I8 Cluster: Putative diguanylate cyclase (GGDEF
domain) precursor; n=3; Nostocaceae|Rep: Putative
diguanylate cyclase (GGDEF domain) precursor - Anabaena
variabilis (strain ATCC 29413 / PCC 7937)
Length = 591
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = -2
Query: 392 LDDLTKAMGRKSFDEDLKA------LPEKGGYLCLFDVDKFKNINEHFGHLLAMKC 243
LD LT+ R+ FDE LKA ++ L LFDVDKFK+ N+++GHL C
Sbjct: 426 LDGLTQVANRRCFDERLKAEWKRLAREQQPLSLILFDVDKFKSYNDYYGHLGGDDC 481
>UniRef50_A6FBK3 Cluster: Sensory transduction protein kinase; n=1;
Moritella sp. PE36|Rep: Sensory transduction protein
kinase - Moritella sp. PE36
Length = 409
Score = 44.4 bits (100), Expect = 0.003
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Frame = -2
Query: 587 IIFFAALVAVISGAQLPLSGTQSD*SCIVEKEAIINNHFERVLDGGLFFSAADVKKLYSM 408
++ A L+A I +S Q+ S ++ + ++ + +F +A V L +
Sbjct: 167 LLICAVLIAAILMLFRDVSSDQAFLSALLACTLTVVEFEQQWISASMFTISAIVLLLSIL 226
Query: 407 YNS---AFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
S AF+DDLT+ GR++ + +L L K + + D+D+FK N+ +GH
Sbjct: 227 KRSHEQAFIDDLTRIPGRRALNIELAQLSGKYS-IAMLDIDRFKKFNDAYGH 277
Score = 37.5 bits (83), Expect = 0.32
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGK--VYRFGGDEFAVIYTGGTLEELLSILKEI 106
G ++ V+K++ SQ+ KG+ V+R+GG+EF +++ G + + + L EI
Sbjct: 276 GHDIGDSVLKMVASQLATVKGRGRVFRYGGEEFTILFKGKSALDCVGYLNEI 327
>UniRef50_A4W9G8 Cluster: Diguanylate cyclase; n=1; Enterobacter sp.
638|Rep: Diguanylate cyclase - Enterobacter sp. 638
Length = 298
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/36 (52%), Positives = 27/36 (75%)
Frame = -2
Query: 362 KSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGHLL 255
+S+D KAL ++G YL L DVD FK IN+++GHL+
Sbjct: 145 ESYDSMNKALGDEGLYLLLLDVDHFKKINDNYGHLI 180
>UniRef50_A0IQI9 Cluster: Diguanylate cyclase; n=1; Serratia
proteamaculans 568|Rep: Diguanylate cyclase - Serratia
proteamaculans 568
Length = 568
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = -2
Query: 401 SAFLDDLTKAMGRKSFDEDLKALPEKGGYL--CLFDVDKFKNINEHFGH 261
S+FLD LT R+ F + ++L L CL D+D FKN+N+++GH
Sbjct: 404 SSFLDPLTNIYNRRKFFRECESLAASSYPLAFCLIDIDNFKNLNDNYGH 452
Score = 35.9 bits (79), Expect = 0.96
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLE---ELLSILKEIVH-FQV- 91
GD+VL+ K+L+S R+GG+EFAVI TLE E++S L+E H F +
Sbjct: 455 GDQVLVAFGKLLQSTFR-SSDIFCRYGGEEFAVILGNCTLENAREVISKLRERTHQFTLT 513
Query: 90 ----GSINLSTSIGVAHSNECPTVERLKMLADE 4
+ +TS G+A ++ + ADE
Sbjct: 514 LADGQKVRFTTSCGIAQVSDIRLLPTAIKQADE 546
>UniRef50_Q8Y595 Cluster: Lmo2174 protein; n=12; Listeria|Rep:
Lmo2174 protein - Listeria monocytogenes
Length = 357
Score = 44.0 bits (99), Expect = 0.004
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = -2
Query: 461 LDGGLFFSAADVKKLYSMYNS-AFLDDLTKAMGRKSFDEDLKALPEKGGY---LCLFDVD 294
+ GL + K+L+ Y + LD LTK + FDE + + + G L L D+D
Sbjct: 173 VSAGLMSNMIKSKQLFQKYEQDSTLDYLTKLSNVRQFDEKINHVMDAGSRQVTLMLIDID 232
Query: 293 KFKNINEHFGH 261
FKNIN+ +GH
Sbjct: 233 YFKNINDTYGH 243
>UniRef50_Q6FED5 Cluster: Putative uncharacterized protein; n=2;
Acinetobacter|Rep: Putative uncharacterized protein -
Acinetobacter sp. (strain ADP1)
Length = 405
Score = 44.0 bits (99), Expect = 0.004
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGT--------LEELLSILKEIV 103
AGD VL ++ LK ++ + + R GGDEFAVI T E LL+ ++ +
Sbjct: 297 AGDAVLQEMANRLKQRLR-HQDFIARLGGDEFAVILESVTQVNHLITIAENLLNSCQQPL 355
Query: 102 HFQVGSINLSTSIGVAHSNECPTVERLKMLADE 4
+F SI+ S S+G+A S T E L AD+
Sbjct: 356 NFNGQSIHFSFSLGIAFSQFASTPEELIAQADQ 388
>UniRef50_A5VMQ1 Cluster: Diguanylate cyclase; n=1; Lactobacillus
reuteri F275|Rep: Diguanylate cyclase - Lactobacillus
reuteri F275
Length = 369
Score = 44.0 bits (99), Expect = 0.004
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPV---DKGKVYRFGGDEFAVIYTGGTLEELLSILKEI- 106
T F G+EVL + + QI G VYRFGG+EF ++ + +LEE+ +L+ I
Sbjct: 233 TYGHFVGNEVLNYFSTVFREQIHSAFPKHGYVYRFGGEEFTIVVSNHSLEEVYQLLQSIE 292
Query: 105 VHFQVGSINLSTSIGVAHSNECPTVERL 22
F SI + + S C +RL
Sbjct: 293 KFFNNKSIVTKEGMKLTISFSCSLTDRL 320
>UniRef50_A4M3Q6 Cluster: Response regulator receiver modulated
diguanylate cyclase; n=3; Deltaproteobacteria|Rep:
Response regulator receiver modulated diguanylate
cyclase - Geobacter bemidjiensis Bem
Length = 349
Score = 44.0 bits (99), Expect = 0.004
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLKALPEK----GGYLCLF--DVDKFKNINEHFGHLLAMKC 243
A +D LT R+ FDE L+ ++ G YL L D+D FKN N+H+GH+ KC
Sbjct: 153 ARVDGLTGVANRRHFDETLRLEVQRAMRNGRYLSLILCDIDFFKNYNDHYGHVAGDKC 210
>UniRef50_A3YC66 Cluster: Putative uncharacterized protein; n=1;
Marinomonas sp. MED121|Rep: Putative uncharacterized
protein - Marinomonas sp. MED121
Length = 557
Score = 44.0 bits (99), Expect = 0.004
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQ 94
TL GD+VL+ V + L+ +P D + RFGGDEFA++ + T E + +E++ F
Sbjct: 175 TLGHNIGDQVLISVAERLQKILPKDS-LIARFGGDEFALLSSKFTHNEAQLLAQELIQFI 233
Query: 93 V-------GSINLSTSIGVAHSN 46
I + TSIG+A S+
Sbjct: 234 ALPFSIFDNEIYIETSIGIADSD 256
>UniRef50_Q47J00 Cluster: PAS:GGDEF; n=1; Dechloromonas aromatica
RCB|Rep: PAS:GGDEF - Dechloromonas aromatica (strain
RCB)
Length = 715
Score = 43.6 bits (98), Expect = 0.005
Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG-GTLEELLSILKEIVHF 97
TL AGDE+L++ L +Q V R GGDEFAVI G+ E+ + + +V
Sbjct: 597 TLGHAAGDELLIEASHRL-TQAVRQSDTVARLGGDEFAVILPKTGSQSEIEEVAQRVVET 655
Query: 96 QV-------GSINLSTSIGVA-HSNECPTVERLKMLAD 7
V G+IN+STS+GVA + +E ++ AD
Sbjct: 656 MVRPFLLSAGTINISTSVGVAIYPRHGEDLEAIRASAD 693
>UniRef50_A1TXG7 Cluster: Diguanylate cyclase; n=1; Marinobacter
aquaeolei VT8|Rep: Diguanylate cyclase - Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 /
VT8)(Marinobacter hydrocarbonoclasticus (strain DSM
11845))
Length = 318
Score = 43.6 bits (98), Expect = 0.005
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 8/76 (10%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIY--TG----GTL-EELLSILKEI-V 103
AGDEVL +V +L+++I D V R GG+EFAV+ TG TL E LL +L+E+ V
Sbjct: 209 AGDEVLRQVSALLQARIR-DCDIVARMGGEEFAVLLPETGLEMARTLAERLLGLLQELTV 267
Query: 102 HFQVGSINLSTSIGVA 55
H SI+LS S G++
Sbjct: 268 HHGGQSISLSASFGIS 283
>UniRef50_A1RLG4 Cluster: Diguanylate cyclase with PAS/PAC sensor;
n=11; Shewanella|Rep: Diguanylate cyclase with PAS/PAC
sensor - Shewanella sp. (strain W3-18-1)
Length = 339
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GDE L K+ K++ +P+D G R+GG+EFA+I + L+I ++I
Sbjct: 227 GDECLRKIAKVIADIVPLDIGLAARYGGEEFALILPNHNAKMALTIAQKI 276
>UniRef50_A1FZE7 Cluster: Diguanylate cyclase; n=1; Stenotrophomonas
maltophilia R551-3|Rep: Diguanylate cyclase -
Stenotrophomonas maltophilia R551-3
Length = 481
Score = 43.6 bits (98), Expect = 0.005
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSI---LKEIV---HF 97
AGD L V +LK V R+GG+EFAVI G L +L++ L+E V
Sbjct: 359 AGDRCLQAVATVLKISAGRAGDSVARYGGEEFAVIVPGSPLSGVLALAERLREAVAALPL 418
Query: 96 QVGSINLSTSIGVAHSNECPTVERLKMLAD 7
GS+++S +G H + ++L AD
Sbjct: 419 PEGSVSISIGVGYLHPPALASADQLLADAD 448
>UniRef50_Q9KM32 Cluster: GGDEF family protein; n=20;
Gammaproteobacteria|Rep: GGDEF family protein - Vibrio
cholerae
Length = 469
Score = 43.2 bits (97), Expect = 0.006
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKGGYLCL--FDVDKFKNINEHFGH 261
D LT R+SF E L+A + G L L FD+D FK IN+ FGH
Sbjct: 313 DSLTDIANRRSFFEHLEAEQTRSGSLTLMVFDIDDFKTINDRFGH 357
>UniRef50_Q7W550 Cluster: Putative uncharacterized protein; n=3;
Bordetella|Rep: Putative uncharacterized protein -
Bordetella parapertussis
Length = 251
Score = 43.2 bits (97), Expect = 0.006
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLK-ALPEK---GGY-LCLFDVDKFKNINEHFGH 261
A DDLT A R+ F L+ AL E+ GG LCLFD+D FK IN+ GH
Sbjct: 81 ALTDDLTGAYNRRYFATMLRDALRERVRGGGLALCLFDIDNFKTINDRHGH 131
>UniRef50_Q4KAN5 Cluster: GGDEF domain protein; n=4;
Pseudomonas|Rep: GGDEF domain protein - Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477)
Length = 366
Score = 43.2 bits (97), Expect = 0.006
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Frame = -2
Query: 410 MYNSAFLDDLTKAMGRKSF----DEDLKALP-EKGGYLCLFDVDKFKNINEHFGH 261
+ + A+LD LT+ R+SF + L+ALP E YL + D+D FK +N+ +GH
Sbjct: 200 LLDQAYLDTLTEIPNRRSFMARAGQRLQALPREHDHYLAMVDIDNFKKVNDVYGH 254
>UniRef50_Q1N5E1 Cluster: GGDEF domain protein; n=1; Oceanobacter
sp. RED65|Rep: GGDEF domain protein - Oceanobacter sp.
RED65
Length = 311
Score = 43.2 bits (97), Expect = 0.006
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Frame = -2
Query: 461 LDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKA---LPEKGGY---LCLFD 300
L G L + + + S N AF D LT A R + +E L+ L ++ G+ + + D
Sbjct: 120 LMGTLIYPLRNAMRYRSALNQAFKDPLTGAGNRIALNESLQREMELAKRHGHDLAILMLD 179
Query: 299 VDKFKNINEHFGHLL 255
+D FK IN+ FGHL+
Sbjct: 180 IDHFKTINDRFGHLV 194
>UniRef50_A7JXY3 Cluster: Ggdef domain protein; n=2; Vibrio sp.
Ex25|Rep: Ggdef domain protein - Vibrio sp. Ex25
Length = 365
Score = 43.2 bits (97), Expect = 0.006
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG------GTLEELLSILKEIVHFQ 94
GD VL ++ + LKS + ++ VYR GGDEFAVI G G E + ++ +
Sbjct: 267 GDTVLREIARRLKS-MALNDFTVYRMGGDEFAVILEGEHVDEEGVREHINAVFDAPILNS 325
Query: 93 VGSINLSTSIGVA-HSNECPTVERLKMLADER 1
LSTS+G+A + + V+ L +AD+R
Sbjct: 326 DNVATLSTSMGLAQYPKDSNNVDFLISIADKR 357
>UniRef50_A7HKL8 Cluster: Response regulator receiver modulated
diguanylate cyclase; n=1; Fervidobacterium nodosum
Rt17-B1|Rep: Response regulator receiver modulated
diguanylate cyclase - Fervidobacterium nodosum Rt17-B1
Length = 474
Score = 43.2 bits (97), Expect = 0.006
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIV--- 103
T GDEVL + KILK + DKG R+GG+EF +I T +E++ ++EI+
Sbjct: 343 TYGHLVGDEVLKILGKILKEAVG-DKGIAGRYGGEEFTLILTKIEKDEVVDFIEEILQKV 401
Query: 102 ---HFQVGSINLSTSIGVAHSNECPTVERLKMLADE 4
F G +S + + + + PT E LK ADE
Sbjct: 402 RTAEFPHGKCTVSCGVVSSENYQSPT-EVLK-AADE 435
Score = 33.9 bits (74), Expect = 3.9
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 347 DLKALPEKGGYLCLFDVDKFKNINEHFGHLL 255
+L +K Y+ +FD+D FK IN+ +GHL+
Sbjct: 318 NLSKYNKKPYYVAMFDLDNFKKINDTYGHLV 348
>UniRef50_A6W6S8 Cluster: Diguanylate cyclase/phosphodiesterase;
n=1; Kineococcus radiotolerans SRS30216|Rep: Diguanylate
cyclase/phosphodiesterase - Kineococcus radiotolerans
SRS30216
Length = 450
Score = 43.2 bits (97), Expect = 0.006
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKE--IVH 100
TL AGDEVL++V L + D+G V R GGDEFAV+ +E L ++ + +
Sbjct: 65 TLGHAAGDEVLVQVAHALARTVG-DRGLVVRLGGDEFAVLVPEPASDEELEVVAKRLLTA 123
Query: 99 FQVGS-------INLSTSIGVAHS 49
VGS I+L SIG+A +
Sbjct: 124 LAVGSFHAGVVPIDLQGSIGIARA 147
>UniRef50_A6T9F4 Cluster: Putative uncharacterized protein; n=1;
Klebsiella pneumoniae subsp. pneumoniae MGH 78578|Rep:
Putative uncharacterized protein - Klebsiella pneumoniae
subsp. pneumoniae MGH 78578
Length = 418
Score = 43.2 bits (97), Expect = 0.006
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVG---S 85
GDEVL+ + +IL++ + + K+YR+GG+EF + + L IL E + V +
Sbjct: 303 GDEVLLVLSRILETSVDRED-KIYRWGGEEFLLFLPHSPIGRAL-ILAEGIRQAVSEYQT 360
Query: 84 INLSTSIGVAHSNECPTVERLKMLADE 4
++++ SIGVA ++ TV++L D+
Sbjct: 361 LSVTVSIGVAEHHDGETVDQLFSRVDK 387
Score = 32.7 bits (71), Expect = 9.0
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -2
Query: 401 SAFLDDLTKAMGRKSFDEDLKA---LPEKGGYLCLFDVDKFKNINEHFGH 261
SA D LT + R+ F ++A +P +G L L D+D FK+IN+ GH
Sbjct: 252 SAAHDPLTGLLNRREFHRLVEAPTFIP-RGYCLLLIDIDHFKSINDIHGH 300
>UniRef50_A5G747 Cluster: Diguanylate cyclase with PAS/PAC sensor;
n=2; Deltaproteobacteria|Rep: Diguanylate cyclase with
PAS/PAC sensor - Geobacter uraniumreducens Rf4
Length = 503
Score = 43.2 bits (97), Expect = 0.006
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVG---- 88
GD +L + K+L + D V R GGDEFAV+ G + ILK + Q G
Sbjct: 401 GDRLLQEAAKVLLAAFRSDD-VVARIGGDEFAVLLPGADSAMVKDILKRVESCQAGVNRA 459
Query: 87 --SINLSTSIGVAHSNECPTVERLKMLADER 1
LS S+G A + ++ + LADER
Sbjct: 460 NSVFRLSLSLGTATAETGESLGEVLKLADER 490
>UniRef50_A3Y4T8 Cluster: Signal transduction protein containing a
membrane domain an EAL and a GGDEF domain-like; n=1;
Marinomonas sp. MED121|Rep: Signal transduction protein
containing a membrane domain an EAL and a GGDEF
domain-like - Marinomonas sp. MED121
Length = 834
Score = 43.2 bits (97), Expect = 0.006
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG----GTL----EELLSILKEIVH 100
GD++L ++ K L+ + D G V R GGDEF +IY GTL EEL IL +
Sbjct: 455 GDQLLKQIAKRLRETVASD-GIVARLGGDEFMIIYPDEDHLGTLQDRAEELNDILNQPFE 513
Query: 99 FQVGSINLSTSIGVA-HSNECPTVERLKMLAD 7
+ S+ +SIGV + T+E L AD
Sbjct: 514 LNMTSVLAGSSIGVCLYPQHGDTLETLVSNAD 545
Score = 34.3 bits (75), Expect = 2.9
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = -2
Query: 341 KALPEKGGYLCLF-DVDKFKNINEHFGHLL 255
KA +KG + LF DVD+FKN+N++ GH +
Sbjct: 425 KAKQDKGKFGLLFLDVDQFKNVNDNLGHAM 454
>UniRef50_A0XYM4 Cluster: Putative uncharacterized protein; n=1;
Alteromonadales bacterium TW-7|Rep: Putative
uncharacterized protein - Alteromonadales bacterium TW-7
Length = 302
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = -2
Query: 452 GLFFSAADVKKLYSMYNSAFL-DDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNIN 276
GLF + ++K+++ F+ DDLT+ R+ F E ++ ++ + + D+D FK+IN
Sbjct: 129 GLFKTMLFMQKMHNRLAQEFIVDDLTQVYNRRCFYEYVENETDESYAVIIIDIDHFKSIN 188
Query: 275 EHFGH 261
+ FGH
Sbjct: 189 DTFGH 193
>UniRef50_A0IXU1 Cluster: Diguanylate cyclase; n=1; Shewanella
woodyi ATCC 51908|Rep: Diguanylate cyclase - Shewanella
woodyi ATCC 51908
Length = 328
Score = 43.2 bits (97), Expect = 0.006
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVH----FQVG 88
GDE+L+ +VK++K+ + ++RFGGDEF VI + E+L + + H
Sbjct: 205 GDEILIDLVKVMKATFN-ELDSLFRFGGDEFVVILSKREKAEMLHLCESFSHKLSIHHGR 263
Query: 87 SINLSTSIGVAHSNECPTVERLKMLADE 4
+ ++ S+G+ N L + AD+
Sbjct: 264 EVKVTISMGIIEINSIEEPSELLVKADK 291
Score = 39.1 bits (87), Expect = 0.10
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = -2
Query: 335 LPEKGGYLCLFDVDKFKNINEHFGHL 258
L K +LC+FD+DKFK IN+ FGHL
Sbjct: 178 LSAKRYWLCIFDIDKFKVINDTFGHL 203
>UniRef50_Q3AB06 Cluster: GGDEF domain protein; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep: GGDEF
domain protein - Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008)
Length = 217
Score = 42.7 bits (96), Expect = 0.008
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI------VHF 97
AGD VL KV +ILK+ + + R+GGDEFAV+ T +E L+I + I F
Sbjct: 108 AGDTVLQKVAEILKN-VTRKVDIIVRWGGDEFAVVLWETTEQEALNIAQRIKTQIENYDF 166
Query: 96 QVGS--INLSTSIGVAHSNE 43
G + +S SIG+A E
Sbjct: 167 VFGQSRVRISVSIGIASMQE 186
Score = 39.5 bits (88), Expect = 0.078
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKGGY-LCLFDVDKFKNINEHFGHL 258
D LT R F+E L + KG L L D+D FKNIN+ +GHL
Sbjct: 63 DALTGLFNRNYFNEKLYNIKTKGPISLILLDLDNFKNINDLYGHL 107
>UniRef50_Q20JW7 Cluster: GGDEF domain protein; n=1; uncultured
bacterium|Rep: GGDEF domain protein - uncultured
bacterium
Length = 207
Score = 42.7 bits (96), Expect = 0.008
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELL----SILKEIVHFQVG 88
GDE+++ + LK G +R GDEF ++ TLEE+ K+IV Q
Sbjct: 51 GDELIVLIANALKQMADAYDGNAFRNFGDEFGLVIPDLTLEEVFLKAEDFRKQIVEQQTS 110
Query: 87 SINLSTSIGVAHS 49
I+ + SIGVA++
Sbjct: 111 DIHGTVSIGVANA 123
>UniRef50_Q1YJ95 Cluster: Diguanylate cyclase family; n=1;
Aurantimonas sp. SI85-9A1|Rep: Diguanylate cyclase
family - Aurantimonas sp. SI85-9A1
Length = 273
Score = 42.7 bits (96), Expect = 0.008
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
D +T + R+ FD+ L ++GG + L D+D FK +N+ +GH
Sbjct: 112 DAMTGLLNRRGFDQSLTRTLKRGGAVILCDIDHFKQVNDSYGH 154
>UniRef50_A6DA01 Cluster: Diguanylate cyclase; n=1; Caminibacter
mediatlanticus TB-2|Rep: Diguanylate cyclase -
Caminibacter mediatlanticus TB-2
Length = 293
Score = 42.7 bits (96), Expect = 0.008
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGT-------LEELL-SILKEIVH 100
GD VL+K+ +I+KS I K+YR+ GDEF +++ T +E ++ I K +
Sbjct: 187 GDFVLIKICEIVKSLIR-KTDKLYRYEGDEFIIVFNRSTILNAQRSIERIIDKISKTRLK 245
Query: 99 FQVGSINLSTSIGVAHSNECPTVERLKMLADE 4
++ I +S S G+ + T+E L ADE
Sbjct: 246 YKENLIEVSVSAGLTSHKKGDTLESLIKRADE 277
Score = 40.3 bits (90), Expect = 0.045
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Frame = -2
Query: 422 KLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGG------YLCLFDVDKFKNINEHFGH 261
+L Y +D LTK RK+ ++DL + + G + + D+D FK IN+ FGH
Sbjct: 125 ELDKAYKELLIDPLTKVYNRKALEKDLNEILKNGKERDLDLVITIIDLDDFKLINDQFGH 184
Query: 260 LL 255
++
Sbjct: 185 IV 186
>UniRef50_A0YPB8 Cluster: Regulatory components of sensory
transduction system; n=1; Lyngbya sp. PCC 8106|Rep:
Regulatory components of sensory transduction system -
Lyngbya sp. PCC 8106
Length = 321
Score = 42.7 bits (96), Expect = 0.008
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLK------ALPEKGGYLCLFDVDKFKNINEHFGHLLAMKC 243
A LD LTK R+ FDE L +K +L L D+D FKN N+ FGH+ +C
Sbjct: 146 ATLDGLTKIPNRRCFDETLNQEWLRLCREQKSLHLILCDIDCFKNYNDTFGHIAGDQC 203
Score = 34.3 bits (75), Expect = 2.9
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
T AGD+ L+KV + L + V R+GG+EFA+I + + + I + I
Sbjct: 194 TFGHIAGDQCLIKVAQTLYEVVRRPADLVARYGGEEFAIILPNTSAQGAIYIAERI 249
>UniRef50_P0AA90 Cluster: Uncharacterized protein yddV; n=24;
Enterobacteriaceae|Rep: Uncharacterized protein yddV -
Escherichia coli O157:H7
Length = 460
Score = 42.7 bits (96), Expect = 0.008
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI------VHFQ 94
GDE+L KV + + V+R+GGDEF ++ T + E L + I +
Sbjct: 349 GDEILRKVSQAFYDNVR-SSDYVFRYGGDEFIIVLTEASENETLRTAERIRSRVEKTKLK 407
Query: 93 VGS---INLSTSIGVAHSNECPTVERLKMLADE 4
+ I LS SIG A N P ERL +ADE
Sbjct: 408 AANGEDIALSLSIGAAMFNGHPDYERLIQIADE 440
>UniRef50_Q9RVP4 Cluster: GGDEF family protein; n=1; Deinococcus
radiodurans|Rep: GGDEF family protein - Deinococcus
radiodurans
Length = 344
Score = 42.3 bits (95), Expect = 0.011
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGHL 258
D LT R++FD+ ++ + GG L L D+D FK IN+H GH+
Sbjct: 192 DPLTGLFNRRAFDQAVRQTVQ-GGTLALLDLDHFKAINDHHGHM 234
Score = 38.3 bits (85), Expect = 0.18
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG---GTLEELL-SILKEI-VHFQ 94
AGD VL V +L +P G YR+GG+EFA++ G E+LL S+ +E+ V
Sbjct: 235 AGDRVLRGVADVLLDHLPAG-GSAYRWGGEEFALLLPGLFPPEAEDLLDSVRQEVQVRSF 293
Query: 93 VGSINLSTSIGV 58
G +++ S G+
Sbjct: 294 AGGAHVTLSAGL 305
>UniRef50_Q5DYR4 Cluster: Two component response regulator; n=1;
Vibrio fischeri ES114|Rep: Two component response
regulator - Vibrio fischeri (strain ATCC 700601 / ES114)
Length = 299
Score = 42.3 bits (95), Expect = 0.011
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEEL 127
AGDEVL++V K L + +VYR+GG+EF +I LE+L
Sbjct: 186 AGDEVLVRVAKALMKTLQRKTDRVYRYGGEEFILIQFDTDLEQL 229
Score = 33.9 bits (74), Expect = 3.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLK------ALPEKGGYLCLFDVDKFKNINEHFGH 261
A LD LT + R+ FD DL+ + L +FD+D FK N+++GH
Sbjct: 133 ASLDGLTNLLNRRMFDFDLENRWAESQRLQANFSLIMFDIDHFKLYNDNYGH 184
>UniRef50_Q15PL7 Cluster: Diguanylate cyclase; n=1;
Pseudoalteromonas atlantica T6c|Rep: Diguanylate cyclase
- Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 300
Score = 42.3 bits (95), Expect = 0.011
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDL---KALPEKGGY---LCLFDVDKFKNINEHFGHLLAMKC 243
A+ D LT+ R+ FDE L + L ++ G L +FD+D FK N+H+GHL C
Sbjct: 137 AYQDGLTQVSNRRYFDEYLLRQQKLSQRSGSFFALLMFDIDFFKYYNDHYGHLAGDDC 194
Score = 37.1 bits (82), Expect = 0.42
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 10/96 (10%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIY--TG--GTL---EELLSILKEIVH 100
AGD+ L V K+LK + V RFGG+EFAV+ TG G + +LL+ ++E+
Sbjct: 190 AGDDCLRLVAKVLKQSVERPGDFVARFGGEEFAVVLPETGIAGAILVATKLLTSVRELGI 249
Query: 99 FQVGS-INLST-SIGVAHSN-ECPTVERLKMLADER 1
GS + T SIG+A S+ T++ L AD R
Sbjct: 250 KHKGSPFGVVTGSIGIAASDGGKKTLQELIDTADRR 285
>UniRef50_A4YQK9 Cluster: Putative uncharacterized protein; n=1;
Bradyrhizobium sp. ORS278|Rep: Putative uncharacterized
protein - Bradyrhizobium sp. (strain ORS278)
Length = 379
Score = 42.3 bits (95), Expect = 0.011
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Frame = -2
Query: 638 LYVFAYKKDVYLRVCTLIIFFAALVAVISGAQLPLSGTQSD*SCIVEKEAIINNHFERVL 459
L +F +D L ++++ + +GAQL +SGT C ++ + + +
Sbjct: 85 LVIFDTHQDARL-AGNVLVYGKPFIRFYAGAQLRISGTNVGTLCAMDTRPRVFGARDVEM 143
Query: 458 DGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSF---DEDLKALPEKGGY---LCLFDV 297
L A D L N + D LT A+ R++F E L+AL E+ + L DV
Sbjct: 144 LRDLAALAVDELMLR---NLSLRDGLTGALSRRAFRSEGERLRALAERHRHPLTCALLDV 200
Query: 296 DKFKNINEHFGH 261
D FK++N++ GH
Sbjct: 201 DHFKSVNDNHGH 212
>UniRef50_A4XG32 Cluster: Diguanylate cyclase/phosphodiesterase;
n=1; Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
Diguanylate cyclase/phosphodiesterase -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 509
Score = 42.3 bits (95), Expect = 0.011
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = -1
Query: 390 GRPDQSNGQKIL*RRFKSAAGKRR----LFVPV*RR*IQKH*RTLRSFAGDEVLMKVVKI 223
G P++++ Q +L + K A K + +++ + + K TL AGD VL K+
Sbjct: 91 GLPNKNHFQLVLEKAIKEAYLKNQQLAIIYIDIDN--LNKVNNTLGHIAGDSVLKKIANR 148
Query: 222 LKSQIPVDKGKVYRFGGDEFAVI 154
LKS I DKG V R GDEFA+I
Sbjct: 149 LKSVI-ADKGFVARLTGDEFAII 170
>UniRef50_Q8D5C1 Cluster: FOG: GGDEF domain; n=1; Vibrio
vulnificus|Rep: FOG: GGDEF domain - Vibrio vulnificus
Length = 337
Score = 41.9 bits (94), Expect = 0.015
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI--------VH 100
GD VL VVK + V + V+R GG+EF ++ G + + L + I +H
Sbjct: 233 GDCVLRSVVKTMAHV--VGEENVFRQGGEEFCILLAGVSHQHALKTAETIRQNIGDTPIH 290
Query: 99 FQVGSINLSTSIGVAHSNECPTVERLKMLAD 7
++ G+I+++ SIG+A ++ V+ + AD
Sbjct: 291 YREGAISVTVSIGLAEAHASSCVDEINRQAD 321
Score = 33.9 bits (74), Expect = 3.9
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLKALPEKGG--YLCLFDVDKFKNINEHFGH 261
A LD LT R + +AL +G +L + D+D FK IN+ +GH
Sbjct: 183 ATLDPLTGTNNRLALKHRYQALKTQGTAFFLLVLDIDHFKAINDEYGH 230
>UniRef50_Q5FJ86 Cluster: Regulator components; n=1; Lactobacillus
acidophilus|Rep: Regulator components - Lactobacillus
acidophilus
Length = 367
Score = 41.9 bits (94), Expect = 0.015
Identities = 16/68 (23%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Frame = -2
Query: 449 LFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGG----YLCLFDVDKFKN 282
+++ +++ ++ + DDLT + ++FDE+++ L + ++ + D+D FK
Sbjct: 187 MYYEQKQKEEIEKLHYESVRDDLTGLLNYRAFDEEMQGLSKDESNMPIFIAVLDIDHFKQ 246
Query: 281 INEHFGHL 258
+N+ +GHL
Sbjct: 247 VNDTYGHL 254
>UniRef50_Q488E6 Cluster: GGDEF domain protein; n=1; Colwellia
psychrerythraea 34H|Rep: GGDEF domain protein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 333
Score = 41.9 bits (94), Expect = 0.015
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 422 KLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCL-FDVDKFKNINEHFGHLLAMK 246
KL S A +D LT + R+ DE L+ L + L D+D FK +N+ FGH + K
Sbjct: 167 KLASSRQEALVDSLTGLLNRRGCDEKLQNLSHADTHSSLAIDIDHFKKVNDTFGHFIGDK 226
Score = 40.7 bits (91), Expect = 0.034
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
T F GD+V+ ++ K ++S I ++ RFGG+EF V+ T L E +I ++I
Sbjct: 218 TFGHFIGDKVIQRIAKTIQSHIG-EQDLAVRFGGEEFVVVMTNTPLAEAKNIAEKI 272
>UniRef50_Q3IKK3 Cluster: Putative uncharacterized protein; n=1;
Pseudoalteromonas haloplanktis TAC125|Rep: Putative
uncharacterized protein - Pseudoalteromonas haloplanktis
(strain TAC 125)
Length = 962
Score = 41.9 bits (94), Expect = 0.015
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEE---LLSILKEIV---HFQ 94
GD+V+ ++ KILKS ++ +V R+GG+EF +++ T E + +L+E + F
Sbjct: 855 GDKVICEIAKILKSHCEGEQ-QVARWGGEEFTLVFPNKTAAEAKLMCELLREEIANNDFS 913
Query: 93 V---GSINLSTSIGVAHSNECPTVERLKMLADE 4
V G ++ S GV+ SN +RL AD+
Sbjct: 914 VIAAGLHQVTASFGVSDSNNIDDYDRLLSGADQ 946
>UniRef50_Q30NR9 Cluster: Diguanylate cyclase/phosphodiesterase
(GGDEF & EAL domains) with PAS/PAC sensor; n=1;
Thiomicrospira denitrificans ATCC 33889|Rep: Diguanylate
cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor - Thiomicrospira denitrificans (strain
ATCC 33889 / DSM 1351)
Length = 577
Score = 41.9 bits (94), Expect = 0.015
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Frame = -2
Query: 482 NNHFERVLDGGLFFSAADVKKLYS-MYNSAFLDDLTKAMGRKSFDEDLKAL---PEKGGY 315
N+ F +F +D+KK +Y +A D LTK R F+++L+A+ +K Y
Sbjct: 122 NSKFSENYYMSVFTDISDIKKSEKKVYYNANYDSLTKLPNRTYFNKELEAILKEADKENY 181
Query: 314 ---LCLFDVDKFKNINEHFGH 261
L D+DKFK +N+ GH
Sbjct: 182 QVALYFIDIDKFKEVNDTHGH 202
>UniRef50_Q1ZIG1 Cluster: GGDEF family protein; n=1; Psychromonas
sp. CNPT3|Rep: GGDEF family protein - Psychromonas sp.
CNPT3
Length = 339
Score = 41.9 bits (94), Expect = 0.015
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -2
Query: 425 KKLYSMYNSAFLDDLTKAMGRKSFDEDLKA-LPEKGGYLCLF--DVDKFKNINEHFGHLL 255
K L A D LT + R +FD +L L K LCL D+D FK N+ +GHLL
Sbjct: 170 KALEKSQRQALYDSLTGLLNRYAFDTELSTFLSTKADGLCLILADIDHFKKFNDQWGHLL 229
>UniRef50_Q12JJ7 Cluster: GGDEF domain precursor; n=1; Shewanella
denitrificans OS217|Rep: GGDEF domain precursor -
Shewanella denitrificans (strain OS217 / ATCC BAA-1090 /
DSM 15013)
Length = 580
Score = 41.9 bits (94), Expect = 0.015
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQI-PVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIV------HF 97
GDEVL+ ++LK+ + P D+ +YR+GG+EF V++ G + + + + HF
Sbjct: 473 GDEVLISFARLLKATVRPSDR--LYRWGGEEFLVLFPGADIAAATQVCERLCHTIASKHF 530
Query: 96 QVGSINLSTSIGVAHSNECPTVERLKMLAD 7
+ G +++S+GV ++ +++ L AD
Sbjct: 531 E-GVGRITSSLGVTEASLDDSLDSLVSRAD 559
>UniRef50_A6TGP5 Cluster: Putative uncharacterized protein; n=1;
Klebsiella pneumoniae subsp. pneumoniae MGH 78578|Rep:
Putative uncharacterized protein - Klebsiella pneumoniae
subsp. pneumoniae MGH 78578
Length = 510
Score = 41.9 bits (94), Expect = 0.015
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -2
Query: 413 SMYNSAFLDDLTKAMGRKSFDEDLKAL--PEKGGYLCLFDVDKFKNINEHFGHL 258
S A +D LT R++FD D+ AL + L L D+D FK+IN+ +GHL
Sbjct: 351 SYVRQATIDALTGCKNRRAFDSDIAALMNDHQPFALALVDIDNFKSINDTWGHL 404
>UniRef50_A5UW82 Cluster: Diguanylate cyclase; n=2; Roseiflexus|Rep:
Diguanylate cyclase - Roseiflexus sp. RS-1
Length = 387
Score = 41.9 bits (94), Expect = 0.015
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Frame = -2
Query: 410 MYNSAFLDDLTKAMGRKSFDED---LKALPEKGGY---LCLFDVDKFKNINEHFGHLL 255
M N A+ D LT R+ ED L AL E+ G +CLFD+D FK +N+ GHL+
Sbjct: 217 MANLAYTDTLTSLPNRRRLYEDVYRLIALAERYGQEFCVCLFDLDHFKRLNDTHGHLV 274
>UniRef50_A4XFJ6 Cluster: Diguanylate cyclase/phosphodiesterase with
PAS/PAC and GAF sensor(S) precursor; n=1;
Caldicellulosiruptor saccharolyticus DSM 8903|Rep:
Diguanylate cyclase/phosphodiesterase with PAS/PAC and
GAF sensor(S) precursor - Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903)
Length = 1015
Score = 41.9 bits (94), Expect = 0.015
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLKALPEKG------GYLCLFDVDKFKNINEHFGHLLAMKC 243
A+ DDLT RK F+ L L +K G + L D+D FK+IN+ +GH + +C
Sbjct: 581 AYYDDLTNLPNRKLFENKLSELIKKAAQTGKIGAVILIDIDNFKDINDLYGHEVGDEC 638
>UniRef50_A3Y705 Cluster: GGDEF domain protein; n=2;
Oceanospirillaceae|Rep: GGDEF domain protein -
Marinomonas sp. MED121
Length = 410
Score = 41.9 bits (94), Expect = 0.015
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
TL AGD+ L+K +IL S++ ++G V RFGGDEF + + + +E ++L+ I
Sbjct: 290 TLGHQAGDKALIKFAEIL-SEVMTNQGIVGRFGGDEFVICFIDKSRQECENLLETI 344
Score = 34.3 bits (75), Expect = 2.9
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDL-KALPEKGG-----YLCLFDVDKFKNINEHFGH 261
A D LTK + R+ F E +AL E+ LC+ D+D+FK +N+ GH
Sbjct: 242 AHFDPLTKLINRRYFFELFDQALDEQNNTKPPLQLCICDLDQFKGVNDTLGH 293
>UniRef50_A3IRT7 Cluster: Peptidase C14, caspase catalytic subunit
p20; n=1; Cyanothece sp. CCY 0110|Rep: Peptidase C14,
caspase catalytic subunit p20 - Cyanothece sp. CCY 0110
Length = 872
Score = 41.9 bits (94), Expect = 0.015
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Frame = -2
Query: 422 KLYSMYNSAFLDDLTKAMGRKSFDEDLKA----LPEKGGYLCLF--DVDKFKNINEHFGH 261
KL M +LD LT+ R+ F ++L+ E LCL D+D FK+ N+ +GH
Sbjct: 699 KLQKMSRLTYLDGLTETYNRRFFQQELQKQYQLTKENSSLLCLILADIDYFKHYNDTYGH 758
Query: 260 LLAMKC 243
L +C
Sbjct: 759 LQGDEC 764
>UniRef50_A1SAT2 Cluster: GGDEF domain-like protein; n=1; Shewanella
amazonensis SB2B|Rep: GGDEF domain-like protein -
Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Length = 595
Score = 41.9 bits (94), Expect = 0.015
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Frame = -2
Query: 566 VAVISGAQLPLSGTQSD*SCIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMY--NSAF 393
V +++ +LPL+ + + + + +N + R F +M+ A
Sbjct: 369 VLLVANHRLPLNWSPEKTHILTQFASALNELWLRERHENRMFELQQELMRANMHLAREAV 428
Query: 392 LDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGHL 258
D LT R+ F E L E+GG L + DVD FK N+ +GH+
Sbjct: 429 TDPLTGLTNRRPFTERLSMQLEQGGILLMADVDFFKGYNDTYGHV 473
>UniRef50_A0YH39 Cluster: Sensory transduction protein kinase; n=1;
marine gamma proteobacterium HTCC2143|Rep: Sensory
transduction protein kinase - marine gamma
proteobacterium HTCC2143
Length = 413
Score = 41.9 bits (94), Expect = 0.015
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = -2
Query: 473 FERVLDGGLFFSAADVKK----LYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCL 306
F++ L + FSA + L S + A+ D+LT +GR++ +E L L + + +
Sbjct: 207 FDQPLISSIMFSATGLTMILGLLKSSFEMAYQDELTGLLGRRALNEKLSGLGNRYA-IAM 265
Query: 305 FDVDKFKNINEHFGH 261
D+D FK N+ GH
Sbjct: 266 IDIDHFKKFNDTHGH 280
Score = 32.7 bits (71), Expect = 9.0
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = -1
Query: 282 H*RTLRSFAGDEVLMKVVKILKSQIPVDKGK--VYRFGGDEFAVIYTGGTLEELLSILKE 109
H + G +V V+K++ + I G YR+GG+EF V++ G +L+ + L E
Sbjct: 270 HFKKFNDTHGHDVGDDVLKVVANHIAETTGGGIPYRYGGEEFCVVFPGKSLKPCIPHL-E 328
Query: 108 IVHFQVGS 85
V +GS
Sbjct: 329 AVREAIGS 336
>UniRef50_Q6N5J0 Cluster: Putative diguanylate cyclase; n=1;
Rhodopseudomonas palustris|Rep: Putative diguanylate
cyclase - Rhodopseudomonas palustris
Length = 383
Score = 41.5 bits (93), Expect = 0.019
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Frame = -2
Query: 392 LDDLTKAMGRKSFDEDLKA----LPEKGGYLCLFDVDKFKNINEHFGH 261
LD LT + R+ F+E++ A PE G L L DVD FK+IN+ FGH
Sbjct: 227 LDHLTGLLNRRGFEEEIAAPMRRAPE-GASLILCDVDHFKSINDTFGH 273
>UniRef50_Q67KG5 Cluster: Putative uncharacterized protein; n=1;
Symbiobacterium thermophilum|Rep: Putative
uncharacterized protein - Symbiobacterium thermophilum
Length = 712
Score = 41.5 bits (93), Expect = 0.019
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQI-PVDKGKVYRFGGDEFAVI--YTG----GTLEELL-SI 118
TL AGD+VL++V +I+++ + P+D R GGDEFA++ YTG E LL ++
Sbjct: 316 TLGHQAGDQVLVRVAEIIQAHLRPIDIAA--RHGGDEFAILMPYTGREAVSVAESLLRAV 373
Query: 117 LKEIVHFQVGSINLSTSIGV 58
+E + S+ ++ SIGV
Sbjct: 374 QQEEFRVKGRSVTMTASIGV 393
>UniRef50_Q5E1H0 Cluster: Putative uncharacterized protein; n=1;
Vibrio fischeri ES114|Rep: Putative uncharacterized
protein - Vibrio fischeri (strain ATCC 700601 / ES114)
Length = 438
Score = 41.5 bits (93), Expect = 0.019
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG----GTLEELLSILKEI 106
TL GDEVL K ++L + + V+R GGDEF VI G +++L S L E
Sbjct: 315 TLGHDVGDEVLKKTAQLLTETVR-SRDNVFRLGGDEFLVIGQGIAQCSGVKKLTSKLLEQ 373
Query: 105 VHFQVG----SINLSTSIGVA 55
F V S+++S S+GVA
Sbjct: 374 FKFPVNIGSESLSISPSVGVA 394
>UniRef50_Q5E0K8 Cluster: Hypothetical membrane spanning protein;
n=1; Vibrio fischeri ES114|Rep: Hypothetical membrane
spanning protein - Vibrio fischeri (strain ATCC 700601 /
ES114)
Length = 561
Score = 41.5 bits (93), Expect = 0.019
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -2
Query: 428 VKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
V K+ + + D LT+++ R+ F D + + +K + D+D FK IN+ FGH
Sbjct: 400 VVKIKYLNIETYTDPLTRSLNRRKFMIDYEGIAQKDHAFLILDIDGFKAINDSFGH 455
Score = 33.1 bits (72), Expect = 6.8
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYT 148
GDEVL KV + + + I + K YR GG+EF V++T
Sbjct: 458 GDEVLEKVAREI-ALILGNHHKCYRIGGEEFVVLFT 492
>UniRef50_Q5E0A0 Cluster: Putative uncharacterized protein; n=1;
Vibrio fischeri ES114|Rep: Putative uncharacterized
protein - Vibrio fischeri (strain ATCC 700601 / ES114)
Length = 430
Score = 41.5 bits (93), Expect = 0.019
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGT-------LEELLSILKEIVHF 97
GD++L++V K ++S I KG +YR GGDEF+++ + EL I+ E +
Sbjct: 325 GDQLLIEVSKRMRSFID-SKGTIYRLGGDEFSILLNKNDNVDVHVFINELFEIISESLLI 383
Query: 96 QVGSINLSTSIGVA-HSNECPTVERLKMLADER 1
IN+S S G + + + +E L +AD+R
Sbjct: 384 SDVVINISISTGYSVYPVDGLILEDLIRIADKR 416
Score = 40.3 bits (90), Expect = 0.045
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = -2
Query: 422 KLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
K MY +++D LT R++FD+D K K L D++ FK IN+ +GH
Sbjct: 270 KKEKMYELSYIDSLTGLYNRRAFDKDAKKC-FKSSILFFCDLNGFKKINDIYGH 322
>UniRef50_Q317L8 Cluster: Diguanylate cyclase (GGDEF domain)
precursor; n=1; Desulfovibrio desulfuricans G20|Rep:
Diguanylate cyclase (GGDEF domain) precursor -
Desulfovibrio desulfuricans (strain G20)
Length = 411
Score = 41.5 bits (93), Expect = 0.019
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Frame = -2
Query: 449 LFFSAADVKKLYSM----YNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLC--LFDVDKF 288
LF +AA +L ++ Y+ AF+D+LT+ R++ D K L GG C + DVD F
Sbjct: 228 LFVAAAGAAQLTALFRDSYSMAFVDELTEVPSRRALMADAKKL---GGSYCVAMADVDHF 284
Query: 287 KNINEHFGH 261
K N+ +GH
Sbjct: 285 KAFNDTYGH 293
Score = 35.9 bits (79), Expect = 0.96
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIY 151
GD+VL V L VD GKVYR+GG+EF +++
Sbjct: 296 GDDVLRMVAARLAG---VDGGKVYRYGGEEFTILF 327
>UniRef50_Q30UN0 Cluster: Diguanylate cyclase; n=1; Thiomicrospira
denitrificans ATCC 33889|Rep: Diguanylate cyclase -
Thiomicrospira denitrificans (strain ATCC 33889 / DSM
1351)
Length = 387
Score = 41.5 bits (93), Expect = 0.019
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -2
Query: 407 YNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
Y AF D+LT GR++ ED+ L K + + D+D FK N+ +GH
Sbjct: 227 YRLAFYDELTALPGRRALIEDMAKLGMKYSF-AMIDIDHFKKFNDTYGH 274
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEE---LLSILKEIV 103
GDEVL V L +++ GK YR+GG+EF V++ L+E IL+EI+
Sbjct: 277 GDEVLKMVASKL-AEVG-GGGKAYRYGGEEFVVLFPSRELDESYKSTDILREII 328
>UniRef50_Q2KZ95 Cluster: Putative signaling membrane protein; n=1;
Bordetella avium 197N|Rep: Putative signaling membrane
protein - Bordetella avium (strain 197N)
Length = 345
Score = 41.5 bits (93), Expect = 0.019
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = -2
Query: 449 LFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKAL----PEKGGYLCLFDVDKFKN 282
L F+A+ + + + +D LT R+SFDE L+ L + L L D+D FK+
Sbjct: 167 LLFAASLTNMIARLRDDRDVDGLTGLWNRRSFDERLERLIARVASEPHALLLIDIDHFKS 226
Query: 281 INEHFGHLLAMK 246
IN+ +GH + K
Sbjct: 227 INDRYGHAVGDK 238
>UniRef50_Q2BHA0 Cluster: Sensor histidine kinase; n=1;
Neptuniibacter caesariensis|Rep: Sensor histidine kinase
- Neptuniibacter caesariensis
Length = 376
Score = 41.5 bits (93), Expect = 0.019
Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Frame = -2
Query: 413 SMYNSAFLDDLTKAMGRKSFDEDLK---ALPEKGGY--LCLF-DVDKFKNINEHFGH 261
+++ + +D LTK R+SF++++ + +GGY CLF D+D FK +N++FGH
Sbjct: 189 NLHRLSSIDMLTKVHNRRSFEQEIVRELSRASRGGYHLACLFLDLDHFKMVNDNFGH 245
>UniRef50_Q191P5 Cluster: Diguanylate cyclase; n=2;
Desulfitobacterium hafniense|Rep: Diguanylate cyclase -
Desulfitobacterium hafniense (strain DCB-2)
Length = 284
Score = 41.5 bits (93), Expect = 0.019
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSI---LKEIV----- 103
AGD+VL K+ +L+ Q+ G V R+GGDE + G + SI L+E +
Sbjct: 175 AGDQVLQKLALLLQKQLRRGSGWVARYGGDELLICLPGSGKKVARSIANRLREAIEHYPF 234
Query: 102 HFQVGSINLSTSIGV 58
+F+ +IN++ SIGV
Sbjct: 235 YFKGKAINITCSIGV 249
>UniRef50_A6QAR7 Cluster: Signal transduction protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Signal transduction protein
- Sulfurovum sp. (strain NBC37-1)
Length = 958
Score = 41.5 bits (93), Expect = 0.019
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIY--------TGGTLEELLSI 118
TL GDE+L+++ +++Q+ D + R GGDEF VI G E+LL +
Sbjct: 574 TLGHHIGDEMLIELAHRIQTQLDNDT-LLARIGGDEFVVIMKLKMHKKEAGEQAEKLLDV 632
Query: 117 LKEIVHFQVGSINLSTSIGVA 55
++E + Q +N + SIG+A
Sbjct: 633 IREPIDIQNYHLNTTASIGIA 653
>UniRef50_A3Y977 Cluster: Diguanylate cyclase; n=1; Marinomonas sp.
MED121|Rep: Diguanylate cyclase - Marinomonas sp. MED121
Length = 368
Score = 41.5 bits (93), Expect = 0.019
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = -2
Query: 419 LYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
L + A++D+LT+ GR++ +E L L K + + DVD FK N+ +GH
Sbjct: 203 LIDSHKMAYVDELTQLPGRRALNERLLGL-SKNYVIAMLDVDHFKKFNDTYGH 254
Score = 36.7 bits (81), Expect = 0.55
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = -1
Query: 195 GKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GK +R+GG+EFAV++ +E+LS L+++
Sbjct: 275 GKAFRYGGEEFAVVFANRKKDEVLSALEQV 304
>UniRef50_A1RLL0 Cluster: Diguanylate cyclase; n=6; Shewanella|Rep:
Diguanylate cyclase - Shewanella sp. (strain W3-18-1)
Length = 292
Score = 41.5 bits (93), Expect = 0.019
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIV-----HFQV 91
GD +L + ++++ I + + +R GGDEF VI G T++ + + IV H
Sbjct: 190 GDYILKEFGDVIRNTIR-NTDQAFRIGGDEFVVIVQG-TIQAASLLCERIVTGTNQHHCF 247
Query: 90 GSINLSTSIGVAHSNECPTVERLKMLADE 4
+S S+G A SN+ E+L LAD+
Sbjct: 248 NQFGVSCSLGAAESNDILEAEQLYELADK 276
>UniRef50_A1GBG0 Cluster: Diguanylate cyclase/phosphodiesterase
precursor; n=2; Salinispora|Rep: Diguanylate
cyclase/phosphodiesterase precursor - Salinispora
arenicola CNS205
Length = 790
Score = 41.5 bits (93), Expect = 0.019
Identities = 37/101 (36%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Frame = -1
Query: 285 KH*RTLRSF-AGDEVLMKVVKILKSQIPVDKGKVY-RFGGDEFAVIYTGGTL------EE 130
KH +R AGD VL +V + L+ + G V R GGDEFAV+ G E
Sbjct: 349 KHVNDVRGHDAGDAVLAEVGRRLRDTL--GSGDVAARLGGDEFAVLMPGPPAAVDQMGER 406
Query: 129 LLSILKEIVHFQVGSINLSTSIGVAHSNECPTVERLKMLAD 7
LL +L G + LS SIG A P +E L AD
Sbjct: 407 LLGVLGAAYELPEGPVFLSVSIGTAGGTGQPDIELLLRHAD 447
>UniRef50_UPI00015BD21E Cluster: UPI00015BD21E related cluster; n=3;
unknown|Rep: UPI00015BD21E UniRef100 entry - unknown
Length = 772
Score = 41.1 bits (92), Expect = 0.026
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEE---LLSILKEIV---HFQ 94
GD+VL + K++ I + R+GG+EF +I T E+ L L+ ++ HF+
Sbjct: 669 GDKVLKAIAKVVSENIR-NTDIFARYGGEEFVIIAPETTKEDAKILAEKLRSLIRNLHFE 727
Query: 93 VGSINLSTSIGVAHSNECPTVERLKMLADE 4
G IN++ S GVA + T E L ADE
Sbjct: 728 EG-INVTCSFGVASLEKHDTKETLLKRADE 756
>UniRef50_Q9KSA6 Cluster: GGDEF family protein; n=19; Vibrio
cholerae|Rep: GGDEF family protein - Vibrio cholerae
Length = 976
Score = 41.1 bits (92), Expect = 0.026
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG------GTLEELLSILKEIVHFQ 94
GD+ ++ V + L + DK +V R+GG+EF ++Y G G E+L ++++
Sbjct: 861 GDQAIVAVSQELLGYVG-DKTRVARWGGEEFTILYVGDPKQAWGYFEKLRCKIEQVDLSA 919
Query: 93 VG-SINLSTSIGVAHSNECPTVERLKMLAD 7
V +N++ SIG A + + + E + LAD
Sbjct: 920 VAPGLNVTVSIGFADAQQAESYETVLKLAD 949
Score = 35.9 bits (79), Expect = 0.96
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKAL------PEKGGYLCLFDVDKFKNINEHFGHLL 255
DDLT R++FD LK P++ + L D+D FK IN+ + H++
Sbjct: 810 DDLTGLANRRAFDMYLKQAFSRLQNPDQQVSIALLDIDHFKQINDRYSHII 860
>UniRef50_Q9KS83 Cluster: GGDEF family protein; n=16; Vibrio
cholerae|Rep: GGDEF family protein - Vibrio cholerae
Length = 521
Score = 41.1 bits (92), Expect = 0.026
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDL-KALPEKGGY-LCLFDVDKFKNINEHFGHL 258
D LT R+ F + L K L EK + L FD+D+FK IN+ +GHL
Sbjct: 363 DSLTNIYNRRFFSQHLCKMLDEKQSFTLISFDIDRFKQINDSYGHL 408
Score = 34.3 bits (75), Expect = 2.9
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVI--YTGGT-LEELLSILKEIVHFQVG 88
AGD L VV ++K ++ V+ RFGGDEFA++ T T L L ++++V +
Sbjct: 409 AGDYALTHVVDVVKKEL-VESDIFARFGGDEFAILSSVTDETALYTYLERIRKVVEAEPV 467
Query: 87 SINLSTSI 64
+N T +
Sbjct: 468 MLNAETPL 475
>UniRef50_Q8UBF5 Cluster: GGDEF family protein; n=1; Agrobacterium
tumefaciens str. C58|Rep: GGDEF family protein -
Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Length = 589
Score = 41.1 bits (92), Expect = 0.026
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVH 100
AGD V+ V ++L S+ D+G ++RFGG+EF V+ +E+ + +++ H
Sbjct: 478 AGDAVMQYVAQVL-SEATSDQGTLFRFGGEEFTVLMPDAGIEDATKLAEKLRH 529
Score = 38.7 bits (86), Expect = 0.14
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 440 SAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEK--GGYLCLF-DVDKFKNINEH 270
+ A+++ + A D LT + R+S DE L EK G CL D+D FK N+
Sbjct: 414 AVANLQLRQRLVGMARQDALTGLLNRRSLDEALNRHIEKPTGSLACLMLDIDHFKRFNDR 473
Query: 269 FGH 261
FGH
Sbjct: 474 FGH 476
>UniRef50_Q8D4A5 Cluster: FOG: GGDEF domain; n=2; Vibrio
vulnificus|Rep: FOG: GGDEF domain - Vibrio vulnificus
Length = 357
Score = 41.1 bits (92), Expect = 0.026
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIY------TGGTLEELLSILKE---I 106
AGD+VLM++ LK QI D + RFGG+EFA++ TL E L + E I
Sbjct: 244 AGDKVLMQIAATLKKQIRSD-DLLARFGGEEFAILLHHVNAEEAMTLAETLRVTVEQLTI 302
Query: 105 VHFQVGSINLSTSIGVA-HSNECPTVERLKMLAD 7
H Q I + SIG+A S+ E L LAD
Sbjct: 303 EHHQ-HRIQCTVSIGIALPSSPNQGFEELMQLAD 335
Score = 39.9 bits (89), Expect = 0.059
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Frame = -2
Query: 467 RVLDGGLFFSAADVKK---LYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGY------ 315
RVL+ + AA V K + M A +D LT A+ R++F E + +K +
Sbjct: 165 RVLETLANWVAAQVHKHQQINKMIELAHIDPLTGALNRRAFVEATYFINDKPRHYDHHTA 224
Query: 314 LCLFDVDKFKNINEHFGH 261
L + D+DKFK IN+ FGH
Sbjct: 225 LLMIDLDKFKEINDQFGH 242
>UniRef50_A6X3N7 Cluster: Diguanylate cyclase/phosphodiesterase
precursor; n=1; Ochrobactrum anthropi ATCC 49188|Rep:
Diguanylate cyclase/phosphodiesterase precursor -
Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 /
NCTC 12168)
Length = 658
Score = 41.1 bits (92), Expect = 0.026
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSI---LKEIV 103
TL GD +L V + L +++ V R GGDEFAV+ TG EE L + L +++
Sbjct: 274 TLGHDVGDALLQAVARRL-TKLGERGDMVCRLGGDEFAVLSTGLREEEALELADRLMDVI 332
Query: 102 H--FQVG--SINLSTSIGVAHSNECPTVERLKMLAD 7
+ VG I + T +GVA S P E L AD
Sbjct: 333 SQPYHVGELEIKIGTCVGVAISEGEPDTEELFKHAD 368
>UniRef50_A6W8F7 Cluster: Diguanylate cyclase; n=1; Kineococcus
radiotolerans SRS30216|Rep: Diguanylate cyclase -
Kineococcus radiotolerans SRS30216
Length = 509
Score = 41.1 bits (92), Expect = 0.026
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -2
Query: 419 LYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
L ++ +A LD LT R++ DE L + + + L DVD FK +N+ FGH
Sbjct: 340 LEALRRAATLDGLTGVANRRTLDEVLARVDGEALAVALLDVDHFKAVNDRFGH 392
>UniRef50_A6F9D0 Cluster: GGDEF; n=1; Moritella sp. PE36|Rep: GGDEF
- Moritella sp. PE36
Length = 589
Score = 41.1 bits (92), Expect = 0.026
Identities = 19/51 (37%), Positives = 33/51 (64%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
AGD L++V KILKS + + V R+GG+EFA+++ L +++ + +I
Sbjct: 483 AGDLALVEVAKILKSHLRSTQEIVARYGGEEFALVFVDTDLNHVIARMNKI 533
>UniRef50_A5ZRH2 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 250
Score = 41.1 bits (92), Expect = 0.026
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Frame = -2
Query: 542 LPLSGTQSD*SCIVEKEAIINNHFERVLDGGLFFSAADVK-KLYSMYNSAFLDDLTKAMG 366
+P+S QS S I E I + F ++ +F+ + + + + A D LT +
Sbjct: 100 IPVSDAQSSYSFIKSYEGIFMSVFFILVLLLVFYIIHNNRIRNEELRRDAQTDGLTGVLN 159
Query: 365 RKS----FDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
+++ +E L+ P + G + DVDKFK +N+H+GH
Sbjct: 160 KRTTEALINEILEQRPHEKGTFIILDVDKFKEVNDHYGH 198
>UniRef50_A5HXY9 Cluster: Putative signaling protein; n=4;
Clostridium botulinum|Rep: Putative signaling protein -
Clostridium botulinum A str. ATCC 3502
Length = 356
Score = 41.1 bits (92), Expect = 0.026
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -2
Query: 410 MYNSAFLDDLTKAMGRKSFDEDLK-ALPEKGGYLCLFDVDKFKNINEHFGH 261
+ + A D+LTK R+ F+E +K + E L L D+D FK IN+ +GH
Sbjct: 203 LIHKANYDELTKIFNRRYFNEIMKNEIKEGNKILVLIDIDNFKTINDIYGH 253
Score = 33.1 bits (72), Expect = 6.8
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG----GTLEELLSILKEIVHFQVG 88
GD +L ++K + DK +RFGGDEF V++ + + +I ++I ++
Sbjct: 256 GDFILRVFANLIKRYLG-DKDLFFRFGGDEFIVLFDDLDDKSVISFMENIRQKINKDKIK 314
Query: 87 SINLSTSIGVA 55
IN+ S G++
Sbjct: 315 GINIDFSYGIS 325
>UniRef50_A4J2L5 Cluster: Diguanylate cyclase with PAS/PAC sensor;
n=1; Desulfotomaculum reducens MI-1|Rep: Diguanylate
cyclase with PAS/PAC sensor - Desulfotomaculum reducens
MI-1
Length = 520
Score = 41.1 bits (92), Expect = 0.026
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGG---TLEEL-LSILKE- 109
T+ GD +L ++ S + +G V RFGGDEFA++ LEE+ ++KE
Sbjct: 214 TMGHQVGDTLLKDTANLINSTVG-KRGVVARFGGDEFAILLNNTDEVLLEEIKRQLIKEV 272
Query: 108 -IVHFQVGSINLSTSIGVAHS-NECPTVERLKMLADE 4
+ + + ++LS SIG A S N T++ L AD+
Sbjct: 273 RVYNKKKPELHLSISIGYATSHNSSKTIDELVKEADD 309
>UniRef50_A3XAQ5 Cluster: Putative diguanylate cyclase; n=1;
Roseobacter sp. MED193|Rep: Putative diguanylate cyclase
- Roseobacter sp. MED193
Length = 300
Score = 41.1 bits (92), Expect = 0.026
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVH-FQVG-- 88
AGDE L V K L+ +P ++ ++ R+GG+EF + + E+ +V F +
Sbjct: 187 AGDECLRAVAKFLRQVLP-EEVELARWGGEEFVALVRRQQVSEVAPFANRLVKGFSLPIT 245
Query: 87 ----SINLSTSIGVAHSNECPTVERLKMLADER 1
I ++ SIGVA+ +E V+ L LAD R
Sbjct: 246 GRNQPIRITFSIGVANLSEVGPVDALLKLADTR 278
Score = 39.9 bits (89), Expect = 0.059
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDL-KALPEKGGYLCLFDVDKFKNINEHFGHLLAMKC 243
D LT + R + D L A+ + G L L D+D FK++N+ FGH +C
Sbjct: 142 DVLTGLLNRGAMDAVLASAISNRAGSLLLMDIDHFKSVNDDFGHAAGDEC 191
>UniRef50_A0L914 Cluster: Diguanylate cyclase/phosphodiesterase with
PAS/PAC and GAF sensor; n=1; Magnetococcus sp. MC-1|Rep:
Diguanylate cyclase/phosphodiesterase with PAS/PAC and
GAF sensor - Magnetococcus sp. (strain MC-1)
Length = 1264
Score = 41.1 bits (92), Expect = 0.026
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIY----TGGTL----EELLSI 118
T+ AGDE+L K + + + + V R GGDEF VI G L E ++
Sbjct: 863 TMGHQAGDELLQKCAERINAAVR-SSDTVARLGGDEFTVILPNIQNGQDLSRIAEGIIKT 921
Query: 117 LKEIVHFQVGSINLSTSIGVA-HSNECPTVERLKMLAD 7
L E + + G N+STS+GVA + ++ E L AD
Sbjct: 922 LTEPFYLKAGEANISTSVGVAVYPDDSQDDEGLMRAAD 959
>UniRef50_Q6LUQ8 Cluster: Hypothetical sensory box/GGDEF family
protein; n=2; Photobacterium profundum|Rep: Hypothetical
sensory box/GGDEF family protein - Photobacterium
profundum (Photobacterium sp. (strain SS9))
Length = 608
Score = 40.7 bits (91), Expect = 0.034
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLKAL------PEKGGYLCLFDVDKFKNINEHFGH 261
+F+D LTK R+SFDE L+ L ++ L L D+D FK N+++GH
Sbjct: 437 SFIDSLTKVANRRSFDEQLRKLWHGHVREQQPLTLILCDIDYFKAFNDNYGH 488
>UniRef50_Q6LK83 Cluster: Hypothetical GGDEF family protein; n=4;
Vibrionaceae|Rep: Hypothetical GGDEF family protein -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 413
Score = 40.7 bits (91), Expect = 0.034
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -2
Query: 407 YNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
+ AF+D LT GR++ + +LK L K L + D+D FK N+ +GH
Sbjct: 238 HEQAFIDQLTAIPGRRALETELKNL-GKTYTLAMLDIDHFKKFNDLYGH 285
>UniRef50_Q30R33 Cluster: Diguanylate cyclase; n=1; Thiomicrospira
denitrificans ATCC 33889|Rep: Diguanylate cyclase -
Thiomicrospira denitrificans (strain ATCC 33889 / DSM
1351)
Length = 318
Score = 40.7 bits (91), Expect = 0.034
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVH------- 100
AGD++L+ + IL+ + D K++R+GG+EF ++ + ++ I ++H
Sbjct: 209 AGDKILIFISNILRKTLR-DGDKIFRYGGEEFTIVINRNSDDQCEQIANRLLHLISSNNL 267
Query: 99 -FQVGSINLSTSIGVAHSNECPTVERLKMLADE 4
+ I+++ SIGV E T + L AD+
Sbjct: 268 IYMGERISVTASIGVTKLKEHDTPDSLLSRADK 300
Score = 39.1 bits (87), Expect = 0.10
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Frame = -2
Query: 425 KKLYSMYNSAFLDDLTKAMGRKSFDEDL------KALPEKGGYLCLFDVDKFKNINEHFG 264
+K+ + ++ LD LTK R+S L K+LP ++ + D+D FK+IN+ +G
Sbjct: 147 QKVKILEETSNLDPLTKVFNRRSLSSYLQEVCSNKSLPYDDLHVMMLDIDNFKSINDKYG 206
Query: 263 HLLAMK 246
H+ K
Sbjct: 207 HIAGDK 212
>UniRef50_Q6REH3 Cluster: Putative uncharacterized protein; n=1;
Rhodococcus sp. DK17|Rep: Putative uncharacterized
protein - Rhodococcus sp. DK17
Length = 343
Score = 40.7 bits (91), Expect = 0.034
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQI-PVDKGKVYRFGGDEFAVIYTG-GTLEELLSILKEIVHFQVGS- 85
GD+ L+++ + L+S + P D V R GGDEF ++ G ++EE +++ I QVG+
Sbjct: 238 GDDALIRLAEQLRSVVRPADT--VARIGGDEFLIVCPGTASVEEAIALATRITDLQVGAD 295
Query: 84 -----INLSTSIGVAHSNECPTVERLKMLAD 7
+ + S+G+A + T + L AD
Sbjct: 296 SAGRPLRFTASVGIALAGPQETRQTLIRRAD 326
>UniRef50_A7HLY2 Cluster: Diguanylate cyclase; n=1; Fervidobacterium
nodosum Rt17-B1|Rep: Diguanylate cyclase -
Fervidobacterium nodosum Rt17-B1
Length = 490
Score = 40.7 bits (91), Expect = 0.034
Identities = 22/85 (25%), Positives = 43/85 (50%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINL 76
GD L VKI+ I + R+GGDEF ++ LE +++ I+ ++ N+
Sbjct: 398 GDNALKMFVKIVNETIR-SMDLIARYGGDEFVIVLPETVLENAQKVIERIID-RLKEENI 455
Query: 75 STSIGVAHSNECPTVERLKMLADER 1
+ S G+ ++E +++ + DE+
Sbjct: 456 TISYGIIDASEYGSIDDIYKTVDEK 480
>UniRef50_A6WE26 Cluster: Diguanylate cyclase; n=1; Kineococcus
radiotolerans SRS30216|Rep: Diguanylate cyclase -
Kineococcus radiotolerans SRS30216
Length = 458
Score = 40.7 bits (91), Expect = 0.034
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEE-------LLSILKEIVH 100
AGDE+L +V + L+ ++ + R GGDEFAV+ G T E L + L+E V
Sbjct: 352 AGDELLREVARRLRREVRAEDVAA-RLGGDEFAVLLRGTTRAEAEDLAARLAAALREPVA 410
Query: 99 FQVGSINLSTSIGVA 55
+ S+ + S+GVA
Sbjct: 411 VEGTSVRVGASVGVA 425
>UniRef50_A6W0K6 Cluster: Diguanylate cyclase precursor; n=1;
Marinomonas sp. MWYL1|Rep: Diguanylate cyclase precursor
- Marinomonas sp. MWYL1
Length = 556
Score = 40.7 bits (91), Expect = 0.034
Identities = 22/50 (44%), Positives = 30/50 (60%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GD VL K+ K+L Q+ DKG V RFGG+EF V+ +E +I + I
Sbjct: 451 GDLVLQKIAKLLTVQVG-DKGIVARFGGEEFTVLLPNMNADEAKNIAEMI 499
>UniRef50_A6VTA2 Cluster: Diguanylate cyclase; n=2; Marinomonas|Rep:
Diguanylate cyclase - Marinomonas sp. MWYL1
Length = 508
Score = 40.7 bits (91), Expect = 0.034
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 8/94 (8%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEEL--------LSILKEIV 103
AGD+VL V K ++S + + + ++R+GG+EF + + TLE+ L++ K
Sbjct: 400 AGDKVLRLVPKQIRSAL-LKEDLMFRYGGEEFVIAFPETTLEQAVERAEAIRLAVAKTPF 458
Query: 102 HFQVGSINLSTSIGVAHSNECPTVERLKMLADER 1
+ Q +++S SIG+A E L AD++
Sbjct: 459 NMQGEPVSISISIGIAELQAQENPESLFARADKQ 492
>UniRef50_A6Q580 Cluster: Putative uncharacterized protein; n=1;
Nitratiruptor sp. SB155-2|Rep: Putative uncharacterized
protein - Nitratiruptor sp. (strain SB155-2)
Length = 332
Score = 40.7 bits (91), Expect = 0.034
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLE---ELLSILKEIV 103
T AGD+VL ++ +I + + D KVYR+GG+EF +I ++ +L LKE++
Sbjct: 218 TFGHIAGDKVLRELGEIFHTYVRKDS-KVYRYGGEEFLIILLHTDIDGAKKLAQRLKEVI 276
Query: 102 -HFQV-----GSINLSTSIGVAHSNECPTVERLKMLADE 4
H + +I ++ S G+A + ER+ AD+
Sbjct: 277 SHHTIVLDDGTNIIVTASFGIAQKKGDESFERVLKRADQ 315
Score = 34.7 bits (76), Expect = 2.2
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKG-GY-LCLFDVDKFKNINEHFGHLLAMK 246
D LT R + +++K L E Y + + D+D FK IN+ FGH+ K
Sbjct: 177 DPLTNLYNRNALKKEIKLLEEASLPYSVIIIDIDDFKKINDTFGHIAGDK 226
>UniRef50_A6D0Y4 Cluster: GGDEF family protein; n=1; Vibrio shilonii
AK1|Rep: GGDEF family protein - Vibrio shilonii AK1
Length = 511
Score = 40.7 bits (91), Expect = 0.034
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSI-LKEI 106
+GDE+LM+V +K+Q+ D ++R GGDEFAVI + EELL+I L E+
Sbjct: 405 SGDEILMQVAAYIKAQLYPDD-MLFRLGGDEFAVI-SRCVDEELLNIYLNEV 454
Score = 35.1 bits (77), Expect = 1.7
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 389 DDLTKAMGRKSFDE--DLKALPEKGGYLCLFDVDKFKNINEHFGHL 258
D LT+ R++F+ D K L + D+DKFK IN+ +GH+
Sbjct: 359 DPLTEVYNRRAFNRLADYHISCNKPFSLVIIDIDKFKQINDKYGHV 404
>UniRef50_A6CU75 Cluster: Response regulator/sensory box
protein/GGDEF domain protein; n=1; Bacillus sp.
SG-1|Rep: Response regulator/sensory box protein/GGDEF
domain protein - Bacillus sp. SG-1
Length = 462
Score = 40.7 bits (91), Expect = 0.034
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -2
Query: 431 DVKKL-YSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGHLL 255
D KK+ + + A +D LTK R++F E E G +L L D+D FK N+ +GHL+
Sbjct: 298 DKKKIEHQLIELAKMDSLTKLANREAFLELYNHNDEAGCFL-LMDIDHFKLFNDQYGHLV 356
Query: 254 AMK 246
K
Sbjct: 357 GDK 359
>UniRef50_A5UZP0 Cluster: Response regulator receiver modulated
diguanylate cyclase/phosphodiesterase with PAS/PAC
sensor; n=2; Roseiflexus|Rep: Response regulator
receiver modulated diguanylate cyclase/phosphodiesterase
with PAS/PAC sensor - Roseiflexus sp. RS-1
Length = 796
Score = 40.7 bits (91), Expect = 0.034
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIY-TGGTLEELLSILKEIVH------- 100
GDEVL+ V LK I V RFGGDEFAV+ + G++E++ + K + H
Sbjct: 414 GDEVLIAVAGRLK-HITRPGDTVARFGGDEFAVVIDSPGSVEDIWRVAKRVQHTLNHPVT 472
Query: 99 FQVGSINLSTSIGVA 55
Q S+ + SIG+A
Sbjct: 473 VQDHSLTVGVSIGIA 487
>UniRef50_A4SIY9 Cluster: GGDEF domain protein; n=4;
Gammaproteobacteria|Rep: GGDEF domain protein -
Aeromonas salmonicida (strain A449)
Length = 340
Score = 40.7 bits (91), Expect = 0.034
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKAL--PEKGGYLCLFDVDKFKNINEHFGHLL 255
D LT + R++FD ++ L ++ L L D+D+FKN N+ +GHLL
Sbjct: 182 DALTSLLNRRAFDLEIDGLIRSKQTFSLILSDIDRFKNFNDEYGHLL 228
>UniRef50_A3WK11 Cluster: GGDEF family protein; n=1; Idiomarina
baltica OS145|Rep: GGDEF family protein - Idiomarina
baltica OS145
Length = 630
Score = 40.7 bits (91), Expect = 0.034
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLKALPEKGG--YLCLFDVDKFKNINEHFGH 261
A +D LT R++FD DL A G +L + D+D+FK N+++GH
Sbjct: 475 AHMDGLTGLFNRRAFDRDLDAAISSGKPYHLMIADIDEFKAYNDNYGH 522
Score = 35.9 bits (79), Expect = 0.96
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGG-TLEELLSILKEIV 103
AGD + ++ + L+S P+ KVYR+GG+E A+I LE L+ L++ V
Sbjct: 524 AGDSAIKEIAECLRSNTPL---KVYRYGGEELAMIVPSAYDLESKLNELRDKV 573
>UniRef50_A3IX14 Cluster: PAS:GGDEF; n=1; Cyanothece sp. CCY
0110|Rep: PAS:GGDEF - Cyanothece sp. CCY 0110
Length = 638
Score = 40.7 bits (91), Expect = 0.034
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEEL-LSILKEIVHFQVGSIN 79
GD++L+ V + L++ +G R GGDEF +++ + + +SIL++I ++
Sbjct: 252 GDKILIAVAETLQTYAKRYEGIAIREGGDEFILLFPIIDVYPIAVSILQDIQTLEIEGAK 311
Query: 78 LSTSIGVAHSNECPTVERLKML 13
+S SIG+A +N P E+ K +
Sbjct: 312 VSASIGIA-TNNLPECEQDKSI 332
>UniRef50_A1FTI5 Cluster: Diguanylate cyclase; n=1; Stenotrophomonas
maltophilia R551-3|Rep: Diguanylate cyclase -
Stenotrophomonas maltophilia R551-3
Length = 426
Score = 40.7 bits (91), Expect = 0.034
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = -2
Query: 419 LYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGY-LCLFDVDKFKNINEHFGH 261
L ++ AF D+LT GR++F+E L+ +G Y + + DVD FK+ N+ GH
Sbjct: 235 LQESFHMAFRDELTGLPGRRAFNETLQR--ARGTYSIAMVDVDHFKSFNDTHGH 286
>UniRef50_A0WAE9 Cluster: Diguanylate cyclase/phosphodiesterase with
GAF sensor; n=1; Geobacter lovleyi SZ|Rep: Diguanylate
cyclase/phosphodiesterase with GAF sensor - Geobacter
lovleyi SZ
Length = 651
Score = 40.7 bits (91), Expect = 0.034
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVH-------F 97
GD +L++V + L + D V RFGGD+F +IY T+ ++ ++ K I+ F
Sbjct: 251 GDWILVQVAQKLCGLVD-DSALVARFGGDDFIIIYEQSTVHKVRNLAKHILAAIKQPFLF 309
Query: 96 QVGSINLSTSIGVA-HSNECPTVERLKMLAD 7
S ++S SIG+A + ++ T L AD
Sbjct: 310 DARSFSISGSIGIAFYPDDADTPTDLLSRAD 340
>UniRef50_Q74CL6 Cluster: Sensory box/response regulator; n=2;
Geobacter|Rep: Sensory box/response regulator -
Geobacter sulfurreducens
Length = 420
Score = 40.3 bits (90), Expect = 0.045
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIV------HF 97
AGDE+L++ +LK + V R GGDEFAV+ + + L+ ++
Sbjct: 316 AGDELLIRAALVLKGAFRAED-VVARIGGDEFAVLLPSADADVVQEALRRVIGKIEQSQT 374
Query: 96 QVGSINLSTSIGVAHSNECPTVERLKMLADER 1
+ + LS S G A +++ +E + LAD R
Sbjct: 375 EDHPVPLSISFGAATASKGDRLEEVLKLADRR 406
>UniRef50_Q5ZX53 Cluster: Two component response regulator with
GGDEF domain; n=4; Legionella pneumophila|Rep: Two
component response regulator with GGDEF domain -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 380
Score = 40.3 bits (90), Expect = 0.045
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVH-FQVGSIN 79
GD+VL+ + +LK ++R GGDEFA+I ++E +SI + I + F+ ++N
Sbjct: 262 GDKVLISIADLLKKIFRRSNDILFRLGGDEFAIIIANQPIKETISICETIKNPFKTENLN 321
>UniRef50_Q5E0N3 Cluster: Sensory transduction protein kinase; n=1;
Vibrio fischeri ES114|Rep: Sensory transduction protein
kinase - Vibrio fischeri (strain ATCC 700601 / ES114)
Length = 442
Score = 40.3 bits (90), Expect = 0.045
Identities = 24/71 (33%), Positives = 39/71 (54%)
Frame = -2
Query: 473 FERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVD 294
F V+ GG F ++K + Y + LDD+T R ++ L L +K + + D+D
Sbjct: 271 FAFVITGGFIFIEKTLRK-FIFYCT--LDDMTGLYRRDFYEMKLNHLLDKS--IIIVDID 325
Query: 293 KFKNINEHFGH 261
KFK+IN+ +GH
Sbjct: 326 KFKSINDKYGH 336
>UniRef50_Q30NZ2 Cluster: Diguanylate cyclase; n=1; Thiomicrospira
denitrificans ATCC 33889|Rep: Diguanylate cyclase -
Thiomicrospira denitrificans (strain ATCC 33889 / DSM
1351)
Length = 249
Score = 40.3 bits (90), Expect = 0.045
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Frame = -2
Query: 620 KKDVYLRVCTLIIFFAALVAVISGAQLPLSGTQSD*SCIVE-KEAIINNHFERVLDGGLF 444
KK + LR ++ ++++I + +SD S ++ +EA+ + ++ LF
Sbjct: 7 KKSLILRTAVTVLVALVVLSIIRTLIINQDLLRSDFSYMLFIQEAVFSIISALIITLLLF 66
Query: 443 FSAA-DVKKL-YSMYNSAFLDDLTKAMGRKSFDEDLKAL----PEKGGYLCLF-DVDKFK 285
S D+KK+ +N AF D LT R ++ L+ E + +F D+DKFK
Sbjct: 67 LSLREDLKKINIKAHNYAFTDGLTGLYNRHYLNDFLEKFNILQKENSMFAVIFIDIDKFK 126
Query: 284 NINEHFGHL 258
IN+ GHL
Sbjct: 127 EINDTIGHL 135
>UniRef50_O67439 Cluster: Putative uncharacterized protein; n=1;
Aquifex aeolicus|Rep: Putative uncharacterized protein -
Aquifex aeolicus
Length = 236
Score = 40.3 bits (90), Expect = 0.045
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSI---LKEIVHFQVGS 85
GD VL + +I++ I V R GGDEF +I +E + +K +
Sbjct: 93 GDRVLKDIARIIRESIRGTDIAV-RIGGDEFLIILPNSNIETAKRVGERIKNAIEETFKD 151
Query: 84 INLSTSIGVA-HSNECPTVERLKMLADER 1
+S S G++ + NE T+E L LAD R
Sbjct: 152 YGISASYGISIYPNEGETLEELINLADSR 180
>UniRef50_Q7CYR0 Cluster: AGR_C_3108p; n=4; Rhizobium/Agrobacterium
group|Rep: AGR_C_3108p - Agrobacterium tumefaciens
(strain C58 / ATCC 33970)
Length = 357
Score = 40.3 bits (90), Expect = 0.045
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GD++L V ++++ + D G V R GG+EFA+I G T EE++ + + I
Sbjct: 230 GDKILATVASVIRANVRKD-GFVARSGGEEFAIILDGNTPEEVMVMCERI 278
Score = 35.5 bits (78), Expect = 1.3
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKG-----GYLCLFDVDKFKNINEHFGH 261
D LT+ R++FD+ L ++ + L L D+D FK IN+ FGH
Sbjct: 180 DSLTRLSNRRAFDDRLASVYDSSIGLQYTTLVLLDIDHFKRINDTFGH 227
>UniRef50_Q11LE0 Cluster: Diguanylate cyclase precursor; n=1;
Mesorhizobium sp. BNC1|Rep: Diguanylate cyclase
precursor - Mesorhizobium sp. (strain BNC1)
Length = 251
Score = 40.3 bits (90), Expect = 0.045
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLKA--LPEKGGYLCLFDVDKFKNINEHFGHL 258
A LDD+T + R +F ++ + E G L L D D+FK IN+ FGHL
Sbjct: 89 ARLDDMTGLLNRSAFIASVEETRVSEGRGCLILIDADRFKQINDTFGHL 137
>UniRef50_A7GWP0 Cluster: Putative signal transduction protein
containing diguanylate cyclase/phosphodiesterase domain;
n=2; Campylobacter|Rep: Putative signal transduction
protein containing diguanylate cyclase/phosphodiesterase
domain - Campylobacter curvus 525.92
Length = 773
Score = 40.3 bits (90), Expect = 0.045
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Frame = -1
Query: 261 FAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVI-------YTGGTLEELLSILKEIV 103
+ GDEVL +VVK +KS +P + RFGGD+F V+ Y L L + + + +
Sbjct: 401 YVGDEVLARVVKNIKSVLP-KNSLLARFGGDDFMVVAKQKGDGYFREFLTRLHAAISQPI 459
Query: 102 HFQVGSINLSTSIGVA 55
+ I+LS IG++
Sbjct: 460 LIESYKISLSAKIGIS 475
>UniRef50_A6W5C3 Cluster: Diguanylate cyclase/phosphodiesterase
precursor; n=1; Kineococcus radiotolerans SRS30216|Rep:
Diguanylate cyclase/phosphodiesterase precursor -
Kineococcus radiotolerans SRS30216
Length = 609
Score = 40.3 bits (90), Expect = 0.045
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSIN 79
AGD +L ++ L + +P D + R+GGDEFAV+ G E L +++ + + G+
Sbjct: 238 AGDRLLRELAAQLTTALPRD-AVLARYGGDEFAVLLPGRCGREALDLVEGL---RAGTRT 293
Query: 78 LSTSIGVAH 52
++ S GVAH
Sbjct: 294 VAFSAGVAH 302
>UniRef50_A6VW49 Cluster: Diguanylate cyclase/phosphodiesterase;
n=2; Marinomonas|Rep: Diguanylate
cyclase/phosphodiesterase - Marinomonas sp. MWYL1
Length = 659
Score = 40.3 bits (90), Expect = 0.045
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG-GTLEELLSILKEIVH-----FQ 94
GDE++ +V + +K IP +YR GGDEF V+ +EEL SI + I+ +
Sbjct: 284 GDELIQRVAERIKGSIP-SSACLYRLGGDEFVVVLENTNEIEELESIAQSIMQNASNTYP 342
Query: 93 VGSIN--LSTSIGVA-HSNECPTVERLKMLAD 7
V + ++ SIG+A + V+ L AD
Sbjct: 343 VAKMEMMITASIGIASYPQHADDVDNLLKNAD 374
>UniRef50_A6VRR9 Cluster: Diguanylate cyclase precursor; n=1;
Marinomonas sp. MWYL1|Rep: Diguanylate cyclase precursor
- Marinomonas sp. MWYL1
Length = 556
Score = 40.3 bits (90), Expect = 0.045
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKE--------IV 103
AGD VL ++ L + + DKG+V R+GGDEF ++ + ++L++I ++ ++
Sbjct: 455 AGDLVLQEIATYLTNVVG-DKGEVARWGGDEFLILVKQNSDQDLVTISEQLQSDRESLVI 513
Query: 102 HFQVGSINLSTSIGVAHSNECPTVERLKMLADE 4
I + S+G A + T+E L AD+
Sbjct: 514 RINKQDITIQFSVGSALVEDNDTLESLLHRADK 546
>UniRef50_A6Q2C3 Cluster: Signal transduction response regulator;
n=1; Nitratiruptor sp. SB155-2|Rep: Signal transduction
response regulator - Nitratiruptor sp. (strain SB155-2)
Length = 765
Score = 40.3 bits (90), Expect = 0.045
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAV----IYTGGTLEELLSILKEIV--HFQ 94
GD++L+ + ILK + ++R GGDEF V + T +L+ +L +KE V ++
Sbjct: 390 GDKLLIDIATILKETLR-SSDLIFRIGGDEFVVLIPKVETKDSLDIVLEKIKESVAKEYR 448
Query: 93 VGSIN--LSTSIGVA-HSNECPTVERLKMLAD 7
G+IN +S S+G+A ++ +E L AD
Sbjct: 449 YGNINFSVSCSLGIAIFPDDSDDIETLTRYAD 480
>UniRef50_A6PBF3 Cluster: Diguanylate cyclase precursor; n=1;
Shewanella sediminis HAW-EB3|Rep: Diguanylate cyclase
precursor - Shewanella sediminis HAW-EB3
Length = 467
Score = 40.3 bits (90), Expect = 0.045
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Frame = -2
Query: 434 ADVKKL-YSMYNSAFLDDLTKAMGRKSFDEDLK----ALPEKGGY-LCLFDVDKFKNINE 273
A++++L + + A +D LT R+ F LK + E+ L LFD+DKFK IN+
Sbjct: 292 AELRQLNLELQHLASIDSLTGIYNRRYFIRSLKDACRTMNEEASLTLLLFDIDKFKTIND 351
Query: 272 HFGHLL 255
+FGH++
Sbjct: 352 NFGHVV 357
>UniRef50_A6DBD8 Cluster: Diguanylate cyclase/phosphodiesterase;
n=1; Caminibacter mediatlanticus TB-2|Rep: Diguanylate
cyclase/phosphodiesterase - Caminibacter mediatlanticus
TB-2
Length = 651
Score = 40.3 bits (90), Expect = 0.045
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 410 MYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCL--FDVDKFKNINEHFGH 261
+Y + D LT+ RK ++ +K L K C+ D+D FK IN+++GH
Sbjct: 228 LYKTTLTDYLTRLGNRKFLEKSVKELINKNEKFCMVFLDLDNFKEINDYYGH 279
Score = 34.3 bits (75), Expect = 2.9
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG 145
GDE+++K+ +ILK I D+ + R GGDEF +I G
Sbjct: 282 GDELIIKISEILKEFIKEDE-IISRVGGDEFVLILKG 317
>UniRef50_A6D1R5 Cluster: Predicted signal transduction protein
containing a membrane domain, an EAL and a GGDEF domain;
n=1; Vibrio shilonii AK1|Rep: Predicted signal
transduction protein containing a membrane domain, an
EAL and a GGDEF domain - Vibrio shilonii AK1
Length = 947
Score = 40.3 bits (90), Expect = 0.045
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGT-LEELLSILKEIVH-----FQ 94
GD++L++V K L + + RFGGDEF ++ T +E+ +++ K+I++ Q
Sbjct: 568 GDKLLVEVSKRLSGCLR-SSDVLARFGGDEFTILIENLTNIEQAIALSKKIINGLRKPIQ 626
Query: 93 VG--SINLSTSIGV-AHSNECPTVERLKMLAD 7
+G S+ +STSIG+ A+ + V+ L AD
Sbjct: 627 IGRESLTISTSIGIAAYPKDGQNVDDLLRAAD 658
>UniRef50_A4SQK1 Cluster: GGDEF domain protein; n=2; Aeromonas|Rep:
GGDEF domain protein - Aeromonas salmonicida (strain
A449)
Length = 539
Score = 40.3 bits (90), Expect = 0.045
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Frame = -2
Query: 425 KKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEK----GGYLCL--FDVDKFKNINEHFG 264
K+L + FLD LT+ R + DE L+ ++ LCL D+D FKNIN+++G
Sbjct: 370 KRLTIQKHKLFLDSLTQVHNRAALDERLELEYKRWLRYNTPLCLAIIDIDHFKNINDNYG 429
Query: 263 HLLAMK 246
H+ K
Sbjct: 430 HMAGDK 435
>UniRef50_A3Y7B5 Cluster: Putative diguanylate cyclase; n=1;
Marinomonas sp. MED121|Rep: Putative diguanylate cyclase
- Marinomonas sp. MED121
Length = 569
Score = 40.3 bits (90), Expect = 0.045
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIY----TGGTLEELLSILKEIVHFQV 91
AGDE L+K+ ++L+ Q+ D+ + R+GG+EF +I L +L IV Q+
Sbjct: 449 AGDECLLKIAQLLEQQLDHDQDLIARYGGEEFIIILPMQDQASCLTRAKMLLNTIVEAQL 508
Query: 90 GSIN-----LSTSIGVAHSNECPTVERLKMLAD 7
+ ++ S+GVA P + +++ D
Sbjct: 509 PHLQNPRKVVTLSMGVAACLPSPDTQVKELIKD 541
Score = 32.7 bits (71), Expect = 9.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 314 LCLFDVDKFKNINEHFGHLLAMKC 243
+ + DVD FK+ N+H+GHL +C
Sbjct: 430 IIMIDVDLFKSYNDHYGHLAGDEC 453
>UniRef50_A0YNV2 Cluster: Regulatory component of sensory
transduction system; n=1; Lyngbya sp. PCC 8106|Rep:
Regulatory component of sensory transduction system -
Lyngbya sp. PCC 8106
Length = 456
Score = 40.3 bits (90), Expect = 0.045
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = -2
Query: 410 MYNSAFLDDLTKAMGRKSFDEDLKALPEKGGY------LCLFDVDKFKNINEHFGHLLAM 249
+Y A D+LTK R++FD LK ++ L + D+D FK N+H+GH
Sbjct: 285 LYQQAITDNLTKISNRRAFDVYLKQEWKRAKREALSLALMMIDIDYFKRYNDHYGHEAGD 344
Query: 248 KC 243
+C
Sbjct: 345 RC 346
>UniRef50_A0Y3C8 Cluster: GGDEF domain protein; n=1; Alteromonadales
bacterium TW-7|Rep: GGDEF domain protein -
Alteromonadales bacterium TW-7
Length = 386
Score = 40.3 bits (90), Expect = 0.045
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Frame = -2
Query: 599 VCTLIIFFAALVAVISGAQLPLSGTQSD*SCIVEKEAIINNHFERVLDGGLFFSAADVKK 420
+C L++F AA A++ G+Q+ + T D ++ + H + +F A+D+ +
Sbjct: 159 LCGLLLFVAATTALMQGSQV--NQTYLDLYTLINFITVPTAHVGMAVFI-IFIMASDLAQ 215
Query: 419 LYSMYNSAFLDDLTKAMGRKSFDE--------DLKALPEKGGYLCLFDVDKFKNINEHFG 264
M A D LTK + R+ F E L L L +D+D FKNIN+ +G
Sbjct: 216 --EMQKLATTDMLTKCINRRGFYEIGEQKLQTHLNCLQHVS--LIYWDIDSFKNINDEYG 271
Query: 263 H 261
H
Sbjct: 272 H 272
>UniRef50_UPI00015BDE9D Cluster: UPI00015BDE9D related cluster; n=1;
unknown|Rep: UPI00015BDE9D UniRef100 entry - unknown
Length = 441
Score = 39.9 bits (89), Expect = 0.059
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKGGY------LCLFDVDKFKNINEHFGH 261
D+LTKA R+ FDE L AL + L +FD+D FK IN+ +GH
Sbjct: 277 DELTKAYNRRFFDEILDALVDAYKNKTAPFSLIIFDIDDFKKINDTYGH 325
>UniRef50_Q9WXZ0 Cluster: Response regulator; n=3; Thermotoga|Rep:
Response regulator - Thermotoga maritima
Length = 450
Score = 39.9 bits (89), Expect = 0.059
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIV 103
GDEVL V IL+ + + GKV R+GG+EF V++ G + ++ + I+
Sbjct: 345 GDEVLRVVANILRETVKI--GKVGRYGGEEFMVVFETGERDAVVKTMDNIM 393
>UniRef50_Q97IS2 Cluster: Diguanylate cyclase/phosphodiesterase
domain 1; n=1; Clostridium acetobutylicum|Rep:
Diguanylate cyclase/phosphodiesterase domain 1 -
Clostridium acetobutylicum
Length = 257
Score = 39.9 bits (89), Expect = 0.059
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -2
Query: 449 LFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGG--YLCLFDVDKFKNIN 276
+F S V + +Y A +D +T A RK +E + K YL LFD+D+ K +N
Sbjct: 88 IFLSNNFVCTVSLLYEDANMDKMTGAYNRKGINEIFQRSIAKQNSFYLMLFDLDETKRLN 147
Query: 275 EHFGHLLAMK 246
+ +GH + K
Sbjct: 148 DKYGHAVGDK 157
>UniRef50_Q8R7R3 Cluster: Diguanylate cyclase/phosphodiesterase
domain 1; n=3; Thermoanaerobacter|Rep: Diguanylate
cyclase/phosphodiesterase domain 1 - Thermoanaerobacter
tengcongensis
Length = 553
Score = 39.9 bits (89), Expect = 0.059
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = -2
Query: 431 DVKKLYSMYNSAFLDDLTKAMGRKSFD----EDLKALPEKGG--YLCLFDVDKFKNINEH 270
+ KK Y + + D LTK R+ F+ E++ E L +FD+D FK IN+
Sbjct: 378 NAKKYYEVTRKSITDPLTKTYNRRYFNDALMENIMRADENNEPVSLIMFDLDNFKQINDT 437
Query: 269 FGHLL 255
+GHL+
Sbjct: 438 YGHLI 442
Score = 37.1 bits (82), Expect = 0.42
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINL 76
GDEVL +V + +K+ + V RFGG+EFAVI T E+ ++ E + +V S +
Sbjct: 443 GDEVLKEVARRIKNNVR-SNDIVARFGGEEFAVILPKLTAEQAY-MIAERIRTEVSSKPI 500
Query: 75 STSIG 61
T G
Sbjct: 501 KTEKG 505
>UniRef50_Q8F244 Cluster: Sensory box/GGDEF family protein; n=16;
Leptospira|Rep: Sensory box/GGDEF family protein -
Leptospira interrogans
Length = 320
Score = 39.9 bits (89), Expect = 0.059
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = -2
Query: 437 AADVKKLYS-MYNSAFLDDLTKAMGRKSFDEDLKAL------PEKGGYLCLFDVDKFKNI 279
A+D+++ + + A D LTK R+SF+E++ L EK L + DVD FK+
Sbjct: 128 ASDLEEANNKLLEQASTDPLTKLKNRRSFNEEINHLIRLGQHQEKSISLMMIDVDHFKDY 187
Query: 278 NEHFGH 261
N+ FGH
Sbjct: 188 NDKFGH 193
>UniRef50_Q8EPA8 Cluster: Hypothetical conserved protein; n=1;
Oceanobacillus iheyensis|Rep: Hypothetical conserved
protein - Oceanobacillus iheyensis
Length = 591
Score = 39.9 bits (89), Expect = 0.059
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = -2
Query: 392 LDDLTKAMGRKSFDEDLKALPEKG--GYLCLFDVDKFKNINEHFGHLL 255
+D LT RK +E + ++G G L LFD+D FK +N+ +GHL+
Sbjct: 441 VDHLTGLYSRKYLEETVTNHMQEGNKGALMLFDIDDFKRVNDSYGHLI 488
Score = 34.3 bits (75), Expect = 2.9
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKE----IVHFQVG 88
GD+VL++V + L+ ++ D R+GG+E A+ +LEE + I KE + H
Sbjct: 489 GDQVLIQVAEALQ-EVVADNYIAARWGGEELAIYAKQISLEEAIRISKEACEIVEHTTNP 547
Query: 87 SINLSTSIGVAHSNECPTVERLKMLADE 4
+ +S+ + S+E T + +D+
Sbjct: 548 RVTISSGVSSWSSDENDTANTIWERSDK 575
>UniRef50_Q87YJ9 Cluster: GGDEF domain protein; n=2; Pseudomonas
syringae group|Rep: GGDEF domain protein - Pseudomonas
syringae pv. tomato
Length = 355
Score = 39.9 bits (89), Expect = 0.059
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -2
Query: 389 DDLTKAMGRKSF----DEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
DDLT + R++ DE L GGY + D+D FK IN+ FGH
Sbjct: 184 DDLTDILNRRALMLALDEQLAN--NSGGYFLMLDIDNFKTINDQFGH 228
>UniRef50_Q7MJD0 Cluster: GGDEF family protein; n=1; Vibrio
vulnificus YJ016|Rep: GGDEF family protein - Vibrio
vulnificus (strain YJ016)
Length = 361
Score = 39.9 bits (89), Expect = 0.059
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVD--KGKVYRFGGDEFAVIYTGGTL----EELLSILKEIV-HF 97
GDE L +LK + + V RFGGDEF +++ + L+ I KEI HF
Sbjct: 256 GDECLRDFSILLKHNLRNNGLDDTVIRFGGDEFIILFDAKDAMVINDRLMDINKEIFNHF 315
Query: 96 QVGSINLSTSIGVAHSNECPTVERLKMLADER 1
+ I+LS S GV+ NE + + ADE+
Sbjct: 316 KNKDIDLSFSHGVS-KNEFDDINKAIAFADEK 346
>UniRef50_Q6LLM3 Cluster: Hipothetical sensory box/GGDEF family
protein; n=2; Photobacterium profundum|Rep: Hipothetical
sensory box/GGDEF family protein - Photobacterium
profundum (Photobacterium sp. (strain SS9))
Length = 1052
Score = 39.9 bits (89), Expect = 0.059
Identities = 23/58 (39%), Positives = 32/58 (55%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGS 85
AGDE L K V +L +I + + R GGDEFA+I T E ++ EI+H G+
Sbjct: 672 AGDEAL-KQVALLLQEITPEHATLSRLGGDEFAIILRHCTQHEAVTFGDEILHLLEGA 728
>UniRef50_Q5ZXI7 Cluster: GGDEF domain protein; n=4; Legionella
pneumophila|Rep: GGDEF domain protein - Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1
/ATCC 33152 / DSM 7513)
Length = 516
Score = 39.9 bits (89), Expect = 0.059
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQI-PVDKGKVYRFGGDEFAVIY-------TGGTLEELLSILKE-I 106
AGD+VL KV I KS I VD + R GG+EF I+ G LE+L ++++ +
Sbjct: 409 AGDKVLKKVAMIFKSSIRTVDF--IARIGGEEFVFIFEQTSSKEAFGILEKLRKLVEDCL 466
Query: 105 VHFQVGSINLSTSIGVAHSNECPTVERLKMLAD 7
+++ ++++ S G+ E +E L M AD
Sbjct: 467 FYYRDKKVDVTVSFGLTTVTEEDDIESLFMRAD 499
>UniRef50_Q5LPK8 Cluster: GGDEF domain protein; n=1; Silicibacter
pomeroyi|Rep: GGDEF domain protein - Silicibacter
pomeroyi
Length = 249
Score = 39.9 bits (89), Expect = 0.059
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = -2
Query: 392 LDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
+D +T+ R E L+ PE+ G + + D+D FK IN+ +GH
Sbjct: 78 IDQMTQLYNRACLLEKLEQEPEEAGMILIADIDHFKQINDTYGH 121
>UniRef50_Q31E25 Cluster: Diguanylate cyclase/phosphodiesterase
(GGDEF & EAL domains) with PAS/PAC sensor; n=1;
Thiomicrospira crunogena XCL-2|Rep: Diguanylate
cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor - Thiomicrospira crunogena (strain XCL-2)
Length = 703
Score = 39.9 bits (89), Expect = 0.059
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINL 76
GD++LM V + LK Q+P ++ + R G FAV+YT T + + KE +H Q G + L
Sbjct: 318 GDQLLMLVAQKLKQQLP-EEAMLARLSGGSFAVLYTSKTQD--VQYAKEDIH-QYGELIL 373
Query: 75 ST 70
T
Sbjct: 374 ET 375
>UniRef50_Q2SCC3 Cluster: Predicted signal transduction protein
containing a membrane domain, an EAL and a GGDEF domain;
n=1; Hahella chejuensis KCTC 2396|Rep: Predicted signal
transduction protein containing a membrane domain, an
EAL and a GGDEF domain - Hahella chejuensis (strain KCTC
2396)
Length = 848
Score = 39.9 bits (89), Expect = 0.059
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKE----IVHFQVG 88
GD +L K+ +L+ P ++G + R GDEFA++ G T + L++ ++ I H+Q+
Sbjct: 476 GDLLLKKLSSLLRKSTP-ERGMLARISGDEFALVIEGVTEAQTLAVAEQVRQTISHYQLA 534
Query: 87 SINLSTSIGVA 55
+L S+G +
Sbjct: 535 YEDLVFSVGAS 545
>UniRef50_Q7CXP3 Cluster: AGR_C_3960p; n=2; Agrobacterium
tumefaciens str. C58|Rep: AGR_C_3960p - Agrobacterium
tumefaciens (strain C58 / ATCC 33970)
Length = 400
Score = 39.9 bits (89), Expect = 0.059
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
D LT R+ F + + A P+ L D+D FK+IN+ FGH
Sbjct: 245 DPLTGVKNRRFFFQTMPAAPDPADAAMLLDIDHFKSINDRFGH 287
>UniRef50_Q1ZFR1 Cluster: Putative uncharacterized protein; n=1;
Psychromonas sp. CNPT3|Rep: Putative uncharacterized
protein - Psychromonas sp. CNPT3
Length = 297
Score = 39.9 bits (89), Expect = 0.059
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGT-------LEELLSIL 115
T F GD+VL + +L + I +R GGDEFA++ T + L L
Sbjct: 191 TYGHFKGDQVLQQFAHLLTTVIRASD-MAFRLGGDEFAIVLQATTDKSSNKVQQRLSDAL 249
Query: 114 KEIVHFQVGSINLSTSIGVAHSNECPTVERLKMLADE 4
KE + +++LS+S+G AH + T L ADE
Sbjct: 250 KEDPF--LSTLSLSSSVGCAHWDRSKTALTLFQEADE 284
Score = 36.7 bits (81), Expect = 0.55
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = -2
Query: 422 KLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEK------GGYLCLFDVDKFKNINEHFGH 261
KL + F D LT R +DE L+ +K G L +FDV+ FKNIN+ +GH
Sbjct: 135 KLSELNIMVFKDHLTNIGNRAYYDEVLQLAIDKNYRDNKGLSLLIFDVNDFKNINDTYGH 194
>UniRef50_Q1VBP0 Cluster: GGDEF family protein; n=1; Vibrio
alginolyticus 12G01|Rep: GGDEF family protein - Vibrio
alginolyticus 12G01
Length = 445
Score = 39.9 bits (89), Expect = 0.059
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIY----TGGTLE----ELLSILKEIV 103
AGD VL V L S I + V RFGGDEF +I+ TG +L + +++++
Sbjct: 325 AGDAVLKSVASRLSSIID-ESDMVGRFGGDEFIIIHRSHTTGTSLSACALRYIQEIEKVI 383
Query: 102 HFQVGSINLSTSIGVA-HSNECPTVERLKMLADE 4
HF+ + + SIG+A + V L AD+
Sbjct: 384 HFKGKELCVGASIGIALYPEHGSNVHELLTAADK 417
>UniRef50_Q1PXY5 Cluster: Putative uncharacterized protein; n=1;
Candidatus Kuenenia stuttgartiensis|Rep: Putative
uncharacterized protein - Candidatus Kuenenia
stuttgartiensis
Length = 829
Score = 39.9 bits (89), Expect = 0.059
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQI-PVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIV-- 103
TL GDE+L++ +LK ++ P D + R GGDEFAVI ++ S ++I
Sbjct: 455 TLGHKVGDEILVEFAILLKERVRPNDI--IARLGGDEFAVILPNTNVDHARSFAEQITQS 512
Query: 102 ---HFQV---GSINLSTSIGVA 55
HF+V N++TS+G+A
Sbjct: 513 AQKHFRVLNERGHNITTSLGIA 534
>UniRef50_Q1GHU8 Cluster: Putative uncharacterized protein; n=1;
Silicibacter sp. TM1040|Rep: Putative uncharacterized
protein - Silicibacter sp. (strain TM1040)
Length = 313
Score = 39.9 bits (89), Expect = 0.059
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -2
Query: 413 SMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
S+ +SAFLD LT R+ ++ L LFD+D FK++N+ +GH
Sbjct: 159 SLEDSAFLDPLTGCFNRRHLARVAQSQDLSKAALILFDLDYFKSVNDTYGH 209
>UniRef50_A6WF17 Cluster: Diguanylate cyclase/phosphodiesterase;
n=1; Kineococcus radiotolerans SRS30216|Rep: Diguanylate
cyclase/phosphodiesterase - Kineococcus radiotolerans
SRS30216
Length = 761
Score = 39.9 bits (89), Expect = 0.059
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGT------LEELLSILKEIVHF 97
AGDE+L +V L++ P + R GDEF V TGG +LL L+ V
Sbjct: 380 AGDELLCEVAARLRALAP-PHAVIGRLAGDEFVVAATGGVDTAVGLARDLLDGLRTPVPL 438
Query: 96 QVGSINLSTSIGVA 55
VG + +S S+G+A
Sbjct: 439 PVGEVVVSASLGIA 452
>UniRef50_A6Q2T9 Cluster: Signal transduction response regulator;
n=1; Nitratiruptor sp. SB155-2|Rep: Signal transduction
response regulator - Nitratiruptor sp. (strain SB155-2)
Length = 458
Score = 39.9 bits (89), Expect = 0.059
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG-GTLEELLSILKEI-------VH 100
GD++L ++ K LK Q ++ + R GGDEF + + T E L S++++I +
Sbjct: 93 GDQILKEIGKKLKKQFGKNEVVIGRIGGDEFGICFKNIDTQEHLYSVVEKIKSIFDKKIQ 152
Query: 99 FQVGSINLSTSI--GVA-HSNECPTVERL 22
F + +LS I GVA + N+ TV++L
Sbjct: 153 FSISGYSLSIFIHGGVAIYPNDGITVQKL 181
>UniRef50_A6PGI1 Cluster: Diguanylate cyclase; n=1; Shewanella
sediminis HAW-EB3|Rep: Diguanylate cyclase - Shewanella
sediminis HAW-EB3
Length = 325
Score = 39.9 bits (89), Expect = 0.059
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -2
Query: 512 SCIVEKEAIINNHFERVLDGGL-FFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKA 336
+C+ ++ + N F +V + L + L + N + K S+
Sbjct: 115 TCLSDQNINLLNGFAKVYENFLTIVIECETDVLTGLLNRKAFESRLKLASETSYQNSGLD 174
Query: 335 LPEKGGYLCLFDVDKFKNINEHFGHL 258
+LC+FD+DKFK IN+ FGHL
Sbjct: 175 DQRLSYWLCIFDIDKFKLINDTFGHL 200
Score = 36.7 bits (81), Expect = 0.55
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLS----ILKEIVHFQVG 88
GDE+L+ +V ++++ G ++RFGGDEF ++ T + + + E+ F
Sbjct: 202 GDEILLDLVTVMRNVFSESDG-MFRFGGDEFVLLIAPDTKQRVRAKCERFCNELYEFHDQ 260
Query: 87 SINLSTSIGV 58
+I ++ S+G+
Sbjct: 261 NIQVTLSMGM 270
>UniRef50_A6DDL0 Cluster: Signaling repeat/GGDEF domain/EAL domain
protein; n=1; Caminibacter mediatlanticus TB-2|Rep:
Signaling repeat/GGDEF domain/EAL domain protein -
Caminibacter mediatlanticus TB-2
Length = 444
Score = 39.9 bits (89), Expect = 0.059
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -2
Query: 425 KKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
K L ++ D LT + R+ F+E K K Y L D+D FK IN+ FGH
Sbjct: 271 KNLQNLKEKTVYDKLTSLLNREGFEELFKEKNYK--YFMLIDLDNFKYINDTFGH 323
Score = 33.9 bits (74), Expect = 3.9
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI--------VH 100
GDEVL + LK D + R+GGDEF +I T +E+ K+I ++
Sbjct: 326 GDEVLKEFAWQLKKHFKEDL--IGRWGGDEF-IIATNKQKKEITQHFKDINKKLKEIQLN 382
Query: 99 FQVGSIN-LSTSIGVAHSNECPTVERLK 19
F LSTS+GVA +N P E K
Sbjct: 383 FDKNPQKILSTSVGVATNNNFPLEELFK 410
>UniRef50_A6AJT5 Cluster: Ggdef domain protein; n=2; Vibrio
harveyi|Rep: Ggdef domain protein - Vibrio harveyi HY01
Length = 359
Score = 39.9 bits (89), Expect = 0.059
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGT----LEELL-SILKEIVHFQV 91
GD V+ +V ++LKS D +++RFGG+EFA+ G +E+ L S L EI
Sbjct: 250 GDMVISQVCQLLKSYCR-DSDQLFRFGGEEFALFMQGDASKLRVEDFLKSTLNEIRQTSF 308
Query: 90 G----SINLSTSIGVAHSNECPTVERLKMLADE 4
G + ++ SIGV H + ++ + +D+
Sbjct: 309 GDEQVKLRVTVSIGVCHKADEQQIDDVMSKSDK 341
>UniRef50_A5ZSI1 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 457
Score = 39.9 bits (89), Expect = 0.059
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGG--TLEELLSILKEIVHFQVGS 85
AGDE++ +K+ + GKVYR GGDEF VI T E LL ++ V G
Sbjct: 348 AGDELIRAAADCMKNSFS-EHGKVYRVGGDEFVVIITKDIPQFENLLRAFEQRVESWHGE 406
Query: 84 I--NLSTSIGVAHSNE 43
+++ S G S+E
Sbjct: 407 FVESMAVSYGYVFSSE 422
Score = 34.3 bits (75), Expect = 2.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALP-EKGGYLCLFDVDKFKNINEHFGH 261
D+LT+ R++++ED+ L K D++ KN N+ FGH
Sbjct: 303 DELTRCYNRRAYEEDINKLDLTKEWVYVSMDINGLKNANDFFGH 346
>UniRef50_A5NB64 Cluster: Diguanylate cyclase; n=3; Shewanella
baltica|Rep: Diguanylate cyclase - Shewanella baltica
OS223
Length = 385
Score = 39.9 bits (89), Expect = 0.059
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSIN- 79
GD VL L+ + G + RFGG+EFA I E+ L ++ E + + +IN
Sbjct: 276 GDTVLKLCADALQDGLK-QYGIIGRFGGEEFAAILPRADSEQAL-VVSEKLRLAIETINV 333
Query: 78 -----LSTSIGVAHSNECPTVERLKMLADE 4
LS SIGVA S+ ++E L + AD+
Sbjct: 334 NPDIRLSISIGVATSSSVSSIEPLLIRADK 363
>UniRef50_A5IN19 Cluster: Diguanylate cyclase; n=2; Thermotoga|Rep:
Diguanylate cyclase - Thermotoga petrophila RKU-1
Length = 491
Score = 39.9 bits (89), Expect = 0.059
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GD+ L++ VK LK + + V+R+GGDEF ++ T + S+LK +
Sbjct: 392 GDKALVEFVKTLKRTVR-ESDLVFRYGGDEFLLVLVDSTKDNAASVLKRV 440
>UniRef50_A4G7R2 Cluster: Putative uncharacterized protein; n=1;
Herminiimonas arsenicoxydans|Rep: Putative
uncharacterized protein - Herminiimonas arsenicoxydans
Length = 313
Score = 39.9 bits (89), Expect = 0.059
Identities = 21/50 (42%), Positives = 27/50 (54%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELL 124
T AGD+ L KV IL + D V RFGG+EF V+ T T E+ +
Sbjct: 195 TYGHIAGDDALRKVASILDDSLRRDSEFVARFGGEEFIVLATEMTAEQAI 244
>UniRef50_A3YGX3 Cluster: Sensory box protein; n=2; Marinomonas sp.
MED121|Rep: Sensory box protein - Marinomonas sp. MED121
Length = 729
Score = 39.9 bits (89), Expect = 0.059
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIV 103
AGDE L++VV + + K+YR+GG+EF + T +E L++ K ++
Sbjct: 618 AGDEALIQVVDCIGEHLK-KADKIYRYGGEEFVCVLPNVTQDEALTMAKNLI 668
>UniRef50_A3Y1G9 Cluster: Sensory transduction/ GGDEF family
protein; n=3; Vibrionales|Rep: Sensory transduction/
GGDEF family protein - Vibrio sp. MED222
Length = 441
Score = 39.9 bits (89), Expect = 0.059
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Frame = -2
Query: 488 IINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKS-FDEDLKALPEKGGYL 312
IIN E+ + + + VK + + A DDLT+ R + +D K L E+
Sbjct: 230 IINWEGEKAIQVVIEDVSDKVKLEQELLHRALHDDLTQVFSRSAIYDWLKKPLKEQTEMS 289
Query: 311 CLF-DVDKFKNINEHFGH 261
CL D+D FK IN+ FGH
Sbjct: 290 CLLLDIDDFKKINDQFGH 307
>UniRef50_A1TXD1 Cluster: Diguanylate cyclase; n=1; Marinobacter
aquaeolei VT8|Rep: Diguanylate cyclase - Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 /
VT8)(Marinobacter hydrocarbonoclasticus (strain DSM
11845))
Length = 504
Score = 39.9 bits (89), Expect = 0.059
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = -1
Query: 270 LRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIV 103
L AGD+VLM+ +L + V RFGG+EF V++TG T E+ +++ I+
Sbjct: 383 LGHLAGDQVLMRFTDVLLAHTRTTD-VVSRFGGEEFLVVFTGVTEREVQTLVMRIM 437
Score = 37.9 bits (84), Expect = 0.24
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Frame = -2
Query: 464 VLDGGLFFSAADVKKLYS-MYNSAFLDDLTKAMGRK----SFDEDLKALPEKGGYLCL-- 306
++ GL A + +L + N + D LT R+ DE L A G CL
Sbjct: 311 IIVSGLLSGALERNRLEEDLLNQSIRDPLTGLHNRRYLMPRLDEILAASNRHGDRFCLAM 370
Query: 305 FDVDKFKNINEHFGHL 258
FD+D FK IN++ GHL
Sbjct: 371 FDIDHFKRINDNLGHL 386
>UniRef50_A0KN72 Cluster: GGDEF, putative; n=1; Aeromonas hydrophila
subsp. hydrophila ATCC 7966|Rep: GGDEF, putative -
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966
/ NCIB 9240)
Length = 517
Score = 39.9 bits (89), Expect = 0.059
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKGG--YLCLFDVDKFKNINEHFGH 261
D LT M R++F + L E +L LFDVD FK IN+++GH
Sbjct: 352 DPLTGIMNRRAFTQRRSELEESATPHWLLLFDVDNFKRINDNWGH 396
Score = 35.1 bits (77), Expect = 1.7
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVI--YTGGTLEELLS-ILKEIVHFQVGS 85
GD VL +V ++L +++ G VYR GGDEFA + + LE LS +L + + Q
Sbjct: 399 GDGVLCRVAELLVAEL--GSGCVYRIGGDEFAALLPWPRSELESGLSRLLARVRNQQWRE 456
Query: 84 IN--LSTSIGVAHS 49
++ S+G AHS
Sbjct: 457 FREAVTLSVGGAHS 470
>UniRef50_Q8FW47 Cluster: GGDEF domain protein; n=2; Brucella|Rep:
GGDEF domain protein - Brucella suis
Length = 240
Score = 39.5 bits (88), Expect = 0.078
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -2
Query: 428 VKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKG--GYLCLFDVDKFKNINEHFGH 261
VK+ + A +D LT + R+SF + A + G G+ + DVD K IN+ +GH
Sbjct: 79 VKRANELARVASVDPLTGLLNRRSFIQQFNAANKAGVRGWFLIVDVDYLKQINDQYGH 136
Score = 33.5 bits (73), Expect = 5.1
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
AGD+ ++ V + L+ + D + R GGDEF G + ++ S+L +I
Sbjct: 138 AGDDAIIAVAQALEDCLSSDS-LIARIGGDEFCAFVPKGAINDVDSVLSDI 187
>UniRef50_Q88UG5 Cluster: Protein containing diguanylate
cyclase/phosphodiesterase domain 1; n=1; Lactobacillus
plantarum|Rep: Protein containing diguanylate
cyclase/phosphodiesterase domain 1 - Lactobacillus
plantarum
Length = 396
Score = 39.5 bits (88), Expect = 0.078
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDK--GKVYRFGGDEFAVIYTGGTLEELLSILKEI------- 106
AGD VL V ++ ++ G+++R+GG+EF +I+ G + E I++ I
Sbjct: 279 AGDAVLRHVAHFVELELNQRSTHGQIFRYGGEEFVIIFRGISALEAGQIMRTIQRKLKTV 338
Query: 105 -VHFQVGSINLSTSIGVA 55
+ F V ++N++ SIG++
Sbjct: 339 PIKFNVQTLNVTVSIGIS 356
>UniRef50_Q6LS76 Cluster: Putative uncharacterized protein; n=2;
Photobacterium profundum|Rep: Putative uncharacterized
protein - Photobacterium profundum (Photobacterium sp.
(strain SS9))
Length = 700
Score = 39.5 bits (88), Expect = 0.078
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDED-------LKALPEKGGYLCLFDVDKFKNINEHFGH 261
A D LT+ RK+FD D LK PE+ L + DV+K K +N+ FGH
Sbjct: 540 AVTDALTELPNRKAFDNDFKNNTERLKRYPERQFGLFIIDVNKLKQVNDEFGH 592
Score = 32.7 bits (71), Expect = 9.0
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -1
Query: 261 FAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGT 139
+ GDE+L V ++L +VYR GGDEFA++ G+
Sbjct: 593 YVGDELLKAVSELLIGACR-QTDRVYRLGGDEFAILLEEGS 632
>UniRef50_Q6ARU5 Cluster: Putative uncharacterized protein; n=1;
Desulfotalea psychrophila|Rep: Putative uncharacterized
protein - Desulfotalea psychrophila
Length = 363
Score = 39.5 bits (88), Expect = 0.078
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSI----LKEIVHFQVG 88
GDEVL+ V +K+ + D R+GGDEF +I TL+E + KE+ VG
Sbjct: 257 GDEVLVMVANSMKASLR-DNELCARYGGDEFCIILPESTLKEAEKVCQRLCKELEKSLVG 315
Query: 87 SINLSTSIGVAHSN 46
+ +S S+G+A S+
Sbjct: 316 T-GVSCSMGIAISD 328
Score = 33.5 bits (73), Expect = 5.1
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLK---ALPEKGGY---LCLFDVDKFKNINEHFGH 261
D LTK + + +F +L+ A ++ GY L FD+DKFK +N+ GH
Sbjct: 206 DGLTKLLNQHAFYSELRRELARAQRRGYCTVLIYFDLDKFKALNDSEGH 254
>UniRef50_Q46U34 Cluster: GGDEF; n=3; Cupriavidus necator|Rep: GGDEF
- Ralstonia eutropha (strain JMP134) (Alcaligenes
eutrophus)
Length = 297
Score = 39.5 bits (88), Expect = 0.078
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
AGD+VL V +++ + D + RFGG+EFAV+ G + +E S+ + +
Sbjct: 179 AGDQVLRAVADLMRDMVDPDHA-LARFGGEEFAVLVPGASADEAASLAQAL 228
>UniRef50_Q3SFR8 Cluster: Putative diguanylate cyclase (GGDEF
domain) precursor; n=1; Thiobacillus denitrificans ATCC
25259|Rep: Putative diguanylate cyclase (GGDEF domain)
precursor - Thiobacillus denitrificans (strain ATCC
25259)
Length = 479
Score = 39.5 bits (88), Expect = 0.078
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = -2
Query: 404 NSAFLDDLTKAMGRKSFDEDLKAL--PEKGGY---LCLFDVDKFKNINEHFGH 261
+ A LD L++ R+SFDE K L K G+ L + D+D FK +N+ FGH
Sbjct: 314 SQARLDHLSQVNNRRSFDEKQKELFATLKDGWTHSLLILDIDNFKQVNDTFGH 366
>UniRef50_Q3IH17 Cluster: Putative uncharacterized protein; n=2;
Alteromonadales|Rep: Putative uncharacterized protein -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 423
Score = 39.5 bits (88), Expect = 0.078
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLK------ALPEKGGYLCLFDVDKFKNINEHFGHLLAMKC 243
AFLD LTK R+ FDE + L L + D+D FK N+ GH+ KC
Sbjct: 256 AFLDSLTKIANRRRFDEKIVDEFSRVKLANCQLSLIIIDIDNFKKFNDRHGHIAGDKC 313
>UniRef50_Q31JQ5 Cluster: Diguanylate cyclase precursor; n=1;
Thiomicrospira crunogena XCL-2|Rep: Diguanylate cyclase
precursor - Thiomicrospira crunogena (strain XCL-2)
Length = 423
Score = 39.5 bits (88), Expect = 0.078
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILK------EIVHF- 97
GDEVL ++ + LK G + R+GG+EF VI TLE+ + + E F
Sbjct: 314 GDEVLKELSERLKQSF-TQHGHIGRWGGEEFIVILENETLEQAVVAAETFRQKTENTSFI 372
Query: 96 QVGSINLSTSIGVAHSNECPTVERLKMLAD 7
+VG NL+ SIGVA T+ L AD
Sbjct: 373 EVG--NLTVSIGVATVTSAQTISELIHSAD 400
>UniRef50_Q9L4F1 Cluster: YkoW protein; n=14; cellular
organisms|Rep: YkoW protein - Bacillus cereus
Length = 892
Score = 39.5 bits (88), Expect = 0.078
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Frame = -2
Query: 452 GLFFSAADVKKLYSMYNS----AFLDDLTKAMGRKSFDEDLKAL-----PEKGGYLCLF- 303
G+F A D+ LY AF D LT R+ F++DLKA+ +F
Sbjct: 442 GMFGIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKAILNTAQTNANDVAVIFL 501
Query: 302 DVDKFKNINEHFGHLL 255
D+D+FK IN+ GH L
Sbjct: 502 DLDRFKKINDRLGHEL 517
>UniRef50_Q21LK5 Cluster: GGDEF domain; n=1; Saccharophagus
degradans 2-40|Rep: GGDEF domain - Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Length = 587
Score = 39.5 bits (88), Expect = 0.078
Identities = 26/67 (38%), Positives = 37/67 (55%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQ 94
T AGDE+L ++V ILK+ V + R GGDEFA+I T+E+ + EI+
Sbjct: 208 TCGHIAGDELLKQLVHILKNT-DVTYDYLARVGGDEFALIKEDATIEQAEEV-AEIIRST 265
Query: 93 VGSINLS 73
V I+ S
Sbjct: 266 VEDISFS 272
>UniRef50_Q21FP0 Cluster: GGDEF domain; n=1; Saccharophagus
degradans 2-40|Rep: GGDEF domain - Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Length = 498
Score = 39.5 bits (88), Expect = 0.078
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKE----IVHFQVG 88
GD V+ V +++K + D V RFGG+EF V+ T+E++ I K I G
Sbjct: 384 GDVVIKMVAQVVKEAVR-DSDIVARFGGEEFCVVLPNATVEQVKIIAKRCRMTIETQNCG 442
Query: 87 SINLSTSIGVA 55
+ +++S G+A
Sbjct: 443 GVKVTSSFGIA 453
>UniRef50_Q0RSL8 Cluster: Putative signaling protein with a PAS
domain; n=1; Frankia alni ACN14a|Rep: Putative signaling
protein with a PAS domain - Frankia alni (strain ACN14a)
Length = 1316
Score = 39.5 bits (88), Expect = 0.078
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPV-DKGKVYRFGGDEFAVIYTG-------GTLEELLSI 118
TL AGD+VL V L+S++ D G RFGGDEF ++ G ++
Sbjct: 488 TLGHAAGDQVLQTVGARLRSELGAGDAGG--RFGGDEFGILLRGTDGPGARAVAARIIQA 545
Query: 117 LKEIVHFQVGSINLSTSIGVAHSNECPT-VERLKMLADE 4
L + + + + S+G+A + CP E+L AD+
Sbjct: 546 LGQPILVDGDEVRIGASVGIALAGACPCGPEQLLWAADQ 584
Score = 32.7 bits (71), Expect = 9.0
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = -2
Query: 461 LDGGLFFSAADVKKLYSMYNS----AFLDDLTKAMGRKSFDEDLKALPEKGG--YLCLFD 300
LDGGL + +V + + A D LT R + E L L E+ + L D
Sbjct: 1123 LDGGLLLTCHEVGERRQLQEQLRQRATRDPLTGLANRVALTELLDHLTEQRSPFAILLVD 1182
Query: 299 VDKFKNINEHFGH 261
+D FK +N+ FGH
Sbjct: 1183 LDHFKPVNDTFGH 1195
>UniRef50_A6VRJ6 Cluster: Diguanylate cyclase; n=1; Marinomonas sp.
MWYL1|Rep: Diguanylate cyclase - Marinomonas sp. MWYL1
Length = 294
Score = 39.5 bits (88), Expect = 0.078
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKE----IVHFQVG 88
GD+VL+K+ ++L I + V R+GG+EF +I+ L +L LK+ + H G
Sbjct: 191 GDKVLIKLAEVLMHNIDL-LDTVGRWGGEEFIIIFAEQNLAQLEEKLKQLNYSVAHTDFG 249
Query: 87 SIN-LSTSIGVAHSN 46
+ ++ SIG+A+ N
Sbjct: 250 IVRPITISIGLANHN 264
Score = 35.5 bits (78), Expect = 1.3
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLKALPEKGG-YLCLFDVDKFKNINEHFGH 261
A D LTK R+ ++ L L G Y+ + DVD FK +N+ FGH
Sbjct: 144 ATTDVLTKLRNRRHMEDQL--LNAIGNHYIAMLDVDDFKKVNDQFGH 188
>UniRef50_A6TIC3 Cluster: Putative uncharacterized protein; n=1;
Klebsiella pneumoniae subsp. pneumoniae MGH 78578|Rep:
Putative uncharacterized protein - Klebsiella pneumoniae
subsp. pneumoniae MGH 78578
Length = 318
Score = 39.5 bits (88), Expect = 0.078
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Frame = -2
Query: 509 CIVEKEAIINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSF----DEDL 342
CI++ E + + +L L A V+ + + N A D LT R+SF DE L
Sbjct: 129 CIIDTEPRVLTRDDFLLLKDL---AEIVEDEFRIINEATTDPLTGICNRRSFALMTDESL 185
Query: 341 KALPEKGGYLC--LFDVDKFKNINEHFGH 261
+ +K C + D+D FK IN++FGH
Sbjct: 186 RKAKKKKKTFCVLIIDLDNFKPINDNFGH 214
>UniRef50_A6DD54 Cluster: Diguanylate cyclase; n=1; Caminibacter
mediatlanticus TB-2|Rep: Diguanylate cyclase -
Caminibacter mediatlanticus TB-2
Length = 508
Score = 39.5 bits (88), Expect = 0.078
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLE---ELLSILKEIVH---- 100
AGD V++K + +L + D + RFGG+EF I ++ + L++IV
Sbjct: 401 AGD-VILKSLGLLFKRYARDVDMIGRFGGEEFVAILPNTNIDGACKFAEKLRKIVEKTKF 459
Query: 99 -FQVGSINLSTSIGVAHSNECPTVERLKMLADER 1
++ IN++ S GVA NE +++ LADER
Sbjct: 460 MYKNTRINVTVSGGVASRNETNSMDETLKLADER 493
Score = 33.1 bits (72), Expect = 6.8
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = -2
Query: 425 KKLYSMYNSAFLDDLTKAMGRKSFDEDLK----ALPEKG-GY-LCLFDVDKFKNINEHFG 264
KK+ + D LT +K+ E+LK + G Y + FD+D FKNIN+ +G
Sbjct: 339 KKVKKLSKEVKTDFLTNIANKKAIMEELKRQESSFKRYGTNYSVVFFDIDHFKNINDTYG 398
Query: 263 H 261
H
Sbjct: 399 H 399
>UniRef50_A6CYZ9 Cluster: GGDEF family protein; n=1; Vibrio shilonii
AK1|Rep: GGDEF family protein - Vibrio shilonii AK1
Length = 467
Score = 39.5 bits (88), Expect = 0.078
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKGGYLCLF--DVDKFKNINEHFGHL 258
D LT R+ F E L+ GGYL + D+D FK IN+ FGH+
Sbjct: 302 DALTGLSNRRYFLEKLEKYRHTGGYLAIIVIDIDDFKKINDTFGHV 347
>UniRef50_A4EFX5 Cluster: Periplasmic sensor diguanylate cyclase;
n=1; Roseobacter sp. CCS2|Rep: Periplasmic sensor
diguanylate cyclase - Roseobacter sp. CCS2
Length = 368
Score = 39.5 bits (88), Expect = 0.078
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = -2
Query: 410 MYNSAFLDDLTKAMGRKSFDEDLKALP---EKGGYLCLFDVDKFKNINEHFGH 261
+ N+A D LT + R+ DE++ A + G + FD+D FK +N+ +GH
Sbjct: 196 LINAAKTDSLTNLLNRRGMDEEIGATQYDRKMGHAMFYFDIDNFKYVNDTYGH 248
>UniRef50_A3XXF2 Cluster: GGDEF family protein; n=2;
Vibrionales|Rep: GGDEF family protein - Vibrio sp.
MED222
Length = 477
Score = 39.5 bits (88), Expect = 0.078
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDL-KALP-EKGGYLCLFDVDKFKNINEHFGH 261
D LT+ R++F++ L KA+ +K L FDVDKFK IN+ FGH
Sbjct: 324 DSLTEIYNRRAFNKVLDKAIQGDKPFSLIGFDVDKFKGINDQFGH 368
>UniRef50_A3WMF3 Cluster: PAS:GGDEF protein; n=1; Idiomarina baltica
OS145|Rep: PAS:GGDEF protein - Idiomarina baltica OS145
Length = 769
Score = 39.5 bits (88), Expect = 0.078
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = -2
Query: 413 SMYNSAFLDDLTKAMGRKSFDEDLKALPEKGG----YLCLFDVDKFKNINEHFGH 261
S+ +A+ D+LT R+ D+++K+L + +C D+D FK IN+++GH
Sbjct: 346 SLQYAAYHDELTGLPNRRKLDQEIKSLTHRQQPSQFSVCYIDLDSFKPINDNYGH 400
>UniRef50_A1SZ67 Cluster: Diguanylate cyclase; n=1; Psychromonas
ingrahamii 37|Rep: Diguanylate cyclase - Psychromonas
ingrahamii (strain 37)
Length = 409
Score = 39.5 bits (88), Expect = 0.078
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -2
Query: 449 LFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCL--FDVDKFKNIN 276
L+ + L +Y + +D LTK + R+ EK CL FD+D+FK IN
Sbjct: 227 LWLQVGQLSMLMKLYRESTVDPLTKLINRRVLFRLAANDLEKQSNFCLIMFDLDRFKRIN 286
Query: 275 EHFGH 261
+ +GH
Sbjct: 287 DTYGH 291
>UniRef50_A1FRV4 Cluster: Diguanylate cyclase with PAS/PAC sensor;
n=1; Stenotrophomonas maltophilia R551-3|Rep:
Diguanylate cyclase with PAS/PAC sensor -
Stenotrophomonas maltophilia R551-3
Length = 729
Score = 39.5 bits (88), Expect = 0.078
Identities = 23/53 (43%), Positives = 29/53 (54%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVH 100
AGD VL V +L+ + D V R GGDEFAVI +G T I E++H
Sbjct: 606 AGDAVLWAVASVLRHGVR-DSDVVARLGGDEFAVILSGCTPRRAARIGGELLH 657
>UniRef50_A0Y4L7 Cluster: Hypothetical GGDEF family protein; n=1;
Alteromonadales bacterium TW-7|Rep: Hypothetical GGDEF
family protein - Alteromonadales bacterium TW-7
Length = 348
Score = 39.5 bits (88), Expect = 0.078
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLS 121
GDEV+ V K +K + DK K YR+GG+EF + T+ +L++
Sbjct: 236 GDEVIKLVAKKVKENL-TDKAKAYRYGGEEFCITAYFDTINDLVA 279
>UniRef50_A0VLS6 Cluster: Diguanylate cyclase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Diguanylate cyclase - Dinoroseobacter
shibae DFL 12
Length = 346
Score = 39.5 bits (88), Expect = 0.078
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG----GTL----EELLSI 118
TL AGD VL++V +IL+ + + +R GGDEF ++ G + + +++
Sbjct: 217 TLGHAAGDMVLLEVARILREETRSEDFS-FRVGGDEFVLVLRNCNDLGLMTRVADRIIAR 275
Query: 117 LKEIVHFQVGSINLSTSIGVAHSNECPTVERLKMLAD 7
L+E ++ +S SIG+ S VE KML+D
Sbjct: 276 LEEPFYYDGKPCRISASIGITISEFYDPVEIDKMLSD 312
Score = 35.1 bits (77), Expect = 1.7
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFD---EDLKALPEKGGY-LCLFDVDKFKNINEHFGH 261
A D LT R++ D E L A P + G+ L L D+D FK++N+ GH
Sbjct: 171 ALTDTLTGLHNRRAMDLTFEQLLANPPRDGFGLMLIDLDYFKSVNDTLGH 220
>UniRef50_A0JR44 Cluster: Diguanylate cyclase/phosphodiesterase;
n=3; Arthrobacter|Rep: Diguanylate
cyclase/phosphodiesterase - Arthrobacter sp. (strain
FB24)
Length = 512
Score = 39.5 bits (88), Expect = 0.078
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI---- 106
TL AGD+VL V + +K + D V R GGDEFAV+ TL S+ I
Sbjct: 128 TLGHAAGDQVLAAVGERIKGSVR-DTDTVARLGGDEFAVLMPATTLARAASVGNRILASL 186
Query: 105 ---VHFQVGSINLSTSIGVAHSNECPTVERLKMLAD 7
V + S+ S+G+ + E+L + AD
Sbjct: 187 DGQVELENDSVQCGASMGLCIGGTGQSAEQLLIEAD 222
>UniRef50_A0J050 Cluster: Diguanylate cyclase precursor; n=1;
Shewanella woodyi ATCC 51908|Rep: Diguanylate cyclase
precursor - Shewanella woodyi ATCC 51908
Length = 538
Score = 39.5 bits (88), Expect = 0.078
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKA-----LPEKGGY-LCLFDVDKFKNINEHFGHLLAMKC 243
D LTK R+ FDE L+A + EK L + D+D FK N+ +GHL +C
Sbjct: 363 DSLTKISNRRCFDESLQACWQHAIREKSSIGLIMIDIDHFKLYNDTYGHLAGDQC 417
>UniRef50_Q9KNI8 Cluster: GGDEF family protein; n=30;
Vibrionales|Rep: GGDEF family protein - Vibrio cholerae
Length = 849
Score = 39.1 bits (87), Expect = 0.10
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
D LT+ + R+ E +P+ G L L +DKF++IN+ GH
Sbjct: 431 DSLTQLLSREGLVEHCHQIPQLNGGLILIGIDKFRDINDSLGH 473
>UniRef50_Q97IS4 Cluster: Diguanylate cyclase/phosphodiesterase
domain 1; n=1; Clostridium acetobutylicum|Rep:
Diguanylate cyclase/phosphodiesterase domain 1 -
Clostridium acetobutylicum
Length = 254
Score = 39.1 bits (87), Expect = 0.10
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSI-- 82
GDE ++ + +K + KG V R GGDEFA IY EEL + K ++ + I
Sbjct: 152 GDEYIISAARAIKEVLGA-KGVVGRTGGDEFAAIYISTDQEELKKV-KTHINKRASEIFN 209
Query: 81 --NLSTSIGVA-HSNECPTVERLKMLADER 1
N++ S+G + + + ++ L LAD+R
Sbjct: 210 GSNINISMGFSTYKKDGKNMKELFDLADKR 239
Score = 32.7 bits (71), Expect = 9.0
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 449 LFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKAL--PEKGGYLCLFDVDKFKNIN 276
+F ++ D L +Y + D +T R + K E ++ FD+D+ K IN
Sbjct: 86 IFLNSVD-NTLKCLYGCVYEDAMTGVYNRNGIKKIFKDTINKEDNFFVMSFDLDETKIIN 144
Query: 275 EHFGHLL 255
++FGHL+
Sbjct: 145 DNFGHLV 151
>UniRef50_Q8YEZ6 Cluster: Diguanylate cyclase/phosphodiesterase
domain 2; n=7; Rhizobiales|Rep: Diguanylate
cyclase/phosphodiesterase domain 2 - Brucella melitensis
Length = 709
Score = 39.1 bits (87), Expect = 0.10
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEEL 127
AGD++L +V L+ QI + R GGDEFA++Y GTL ++
Sbjct: 328 AGDQLLQEVALRLR-QITTADQFIARLGGDEFAIVYRSGTLAQI 370
>UniRef50_Q87PR0 Cluster: GGDEF family protein; n=7; Vibrio|Rep:
GGDEF family protein - Vibrio parahaemolyticus
Length = 513
Score = 39.1 bits (87), Expect = 0.10
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI--------V 103
AGDE L+ V +++ + + + YR GGDEF ++ T EEL + L+++
Sbjct: 406 AGDEALLHVTRLVNANLNAGD-RFYRAGGDEFCILSTVTDTEELEAYLEKLRGIVASSSF 464
Query: 102 HFQVGSINLSTSIG-VAHSNECP 37
++ SI + SIG V H +E P
Sbjct: 465 DYEEASIICTLSIGAVVHHDEDP 487
Score = 37.9 bits (84), Expect = 0.24
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -2
Query: 422 KLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCL--FDVDKFKNINEHFGHL 258
K + A LD LT+ + R+ F+++L G L FD+D FK IN+ +GHL
Sbjct: 349 KTVELKRMAELDPLTQLLNRRVFNDNLLNQINSGKPFSLVGFDIDHFKVINDKYGHL 405
>UniRef50_Q7UWZ9 Cluster: Putative uncharacterized protein; n=1;
Pirellula sp.|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 875
Score = 39.1 bits (87), Expect = 0.10
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELL 124
AGDEVL KV K+L+ + + V R+GG+EF V+ G L+E +
Sbjct: 441 AGDEVLRKVSKVLRD-LHEENQVVCRYGGEEFCVMLPGHDLDEAM 484
>UniRef50_Q7UJ25 Cluster: Putative uncharacterized protein; n=1;
Pirellula sp.|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 585
Score = 39.1 bits (87), Expect = 0.10
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = -2
Query: 425 KKLYSMYNSAFLDDLTKAMGRKSFDEDL---KAL-PEKGGYLCLFDVDKFKNINEHFGH 261
++L S A D LT+ R +FDE L AL P + G L + DVD FK N+ GH
Sbjct: 145 QQLQSAEQKAQTDALTQIFNRGAFDEHLLRRHALGPTRAGVLAVLDVDHFKKFNDTHGH 203
Score = 37.9 bits (84), Expect = 0.24
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKE 109
AGDEVL V ++L +++ G V RFGG+EF ++ TL E + ++++
Sbjct: 205 AGDEVLRVVSQLLDARLQ-PHGMVARFGGEEFVMLLHDKTLAEAVELIEQ 253
>UniRef50_Q749W0 Cluster: GGDEF domain protein; n=2; Geobacter|Rep:
GGDEF domain protein - Geobacter sulfurreducens
Length = 411
Score = 39.1 bits (87), Expect = 0.10
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -2
Query: 419 LYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
L YN AF D+LT R++ E L L + + + DVD FK N+ +GH
Sbjct: 231 LKDSYNMAFRDELTGLPSRRALSEQLTWLGRRYS-VAMVDVDHFKKFNDTYGH 282
Score = 36.7 bits (81), Expect = 0.55
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GD+VL V L+ GK YR+GG+EF +++ + EE+L L+E+
Sbjct: 285 GDQVLRLVAAKLRGV--GGGGKAYRYGGEEFTILFPHRSREEVLGRLEEL 332
>UniRef50_Q5QW01 Cluster: Intracellular signaling protein; n=1;
Idiomarina loihiensis|Rep: Intracellular signaling
protein - Idiomarina loihiensis
Length = 766
Score = 39.1 bits (87), Expect = 0.10
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEF-AVIYTGGTLEELLSILKEIV-- 103
+L + GDEVL++ + L+ Q+ + + RFGGDEF AVI +E++ ++ E++
Sbjct: 385 SLGHYLGDEVLIETAQRLQ-QVVSEPNLLCRFGGDEFVAVIQDMSAVEQVNALCAEVLAV 443
Query: 102 ---HFQVG--SINLSTSIGVA 55
F++G ++LS +IGV+
Sbjct: 444 FEQPFRIGEVEVSLSAAIGVS 464
>UniRef50_Q5QVZ0 Cluster: Signaling protein with membrane-bound
sensor domain and GGDEF domain; n=1; Idiomarina
loihiensis|Rep: Signaling protein with membrane-bound
sensor domain and GGDEF domain - Idiomarina loihiensis
Length = 398
Score = 39.1 bits (87), Expect = 0.10
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = -2
Query: 452 GLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINE 273
GL + AD M A++D+LT R++ L+ L ++ +C+ DVD FK N+
Sbjct: 214 GLLLALAD-----QMLKLAYIDELTGLPQRRALMSQLQHLRKRSA-VCMLDVDHFKKFND 267
Query: 272 HFGH 261
+GH
Sbjct: 268 RYGH 271
Score = 34.3 bits (75), Expect = 2.9
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINL 76
GD+VL + +ILK K YR+GG+EF +++ E+L ++L E V QV + L
Sbjct: 274 GDQVLRLLGRILKEH---GGFKAYRYGGEEFTLVFFHNDEEKLKNLL-ESVRSQVANYPL 329
>UniRef50_Q5QUY1 Cluster: Signaling protein with a ligand-binding
sensor domain and GGDEF domain; n=2; Idiomarina|Rep:
Signaling protein with a ligand-binding sensor domain and
GGDEF domain - Idiomarina loihiensis
Length = 970
Score = 39.1 bits (87), Expect = 0.10
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLE---ELLSILKE-----IVH 100
GD+VL+++ +IL +I D V R+GG+EFAV+ T LE E ++E +
Sbjct: 863 GDKVLIRLAEILNDEIR-DIDYVARWGGEEFAVLITNSELEIAREASERMRERIATTLFD 921
Query: 99 FQVGSINLSTSIGVAHSNECPTVERLKMLADE 4
V + ++ SIGVA S + L + AD+
Sbjct: 922 DLVEDMKITVSIGVASSYDYADHSSLLVAADK 953
>UniRef50_Q5E662 Cluster: Sensory box/GGDEF family protein; n=1;
Vibrio fischeri ES114|Rep: Sensory box/GGDEF family
protein - Vibrio fischeri (strain ATCC 700601 / ES114)
Length = 631
Score = 39.1 bits (87), Expect = 0.10
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQI-PVDKGKVYRFGGDEFAVIYTGGTLEE---LLSILKEIVHFQVG 88
GD+V+ V +IL+++ +D V R GG+EFA++ +L+E +L+ L+ +H G
Sbjct: 523 GDKVIKNVARILQTESRSIDF--VARIGGEEFAILLPNTSLKEAEVILNRLRVAIHLADG 580
Query: 87 SINLSTSIGVAHSNEC 40
S +++ S GV +C
Sbjct: 581 SQSVTVSGGVTDICDC 596
>UniRef50_Q5E5K1 Cluster: Putative uncharacterized protein; n=1;
Vibrio fischeri ES114|Rep: Putative uncharacterized
protein - Vibrio fischeri (strain ATCC 700601 / ES114)
Length = 691
Score = 39.1 bits (87), Expect = 0.10
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVI 154
T AGDEVL++V +++K + +VYR+GGDEF V+
Sbjct: 565 TYGHIAGDEVLIQVSRLIKQGFHSLETQVYRYGGDEFFVL 604
>UniRef50_Q3ADQ4 Cluster: Response regulator/sensory box
protein/GGDEF domain protein; n=2; Clostridia|Rep:
Response regulator/sensory box protein/GGDEF domain
protein - Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008)
Length = 668
Score = 39.1 bits (87), Expect = 0.10
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = -2
Query: 446 FFSAADVKKLYS-MYNSAFLDDLTKAMGRKSFDEDLKALPEKGGY------LCLFDVDKF 288
F + KKL +Y + D LT+A R+ F E L+ E+ L + D+D F
Sbjct: 488 FIDLTERKKLEEQLYRLSITDYLTQAYNRRYFTEMLEREIERAKRTKMPFALIMLDIDHF 547
Query: 287 KNINEHFGH 261
KN+N+ FGH
Sbjct: 548 KNVNDRFGH 556
>UniRef50_Q3AAI7 Cluster: GGDEF/GAF/HDIG domain protein; n=1;
Carboxydothermus hydrogenoformans Z-2901|Rep:
GGDEF/GAF/HDIG domain protein - Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008)
Length = 550
Score = 39.1 bits (87), Expect = 0.10
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
AGD+++ KI+KS + + V+R+GGDEFAV+ + L++ + I
Sbjct: 233 AGDQIIKTTAKIIKSSVRKND-LVFRYGGDEFAVLLPATDYQTALNVAQRI 282
>UniRef50_Q2RGK1 Cluster: Diguanylate cyclase; n=1; Moorella
thermoacetica ATCC 39073|Rep: Diguanylate cyclase -
Moorella thermoacetica (strain ATCC 39073)
Length = 272
Score = 39.1 bits (87), Expect = 0.10
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYT--GGTLEELLSILKEIVH 100
TL GDEVL + LK +K R+GGDEF V++ G +E+ + LKE +
Sbjct: 153 TLGHQIGDEVLRAAARALKKATR-EKDIAARYGGDEFVVLFAGKGPRVEKFKARLKENLM 211
Query: 99 FQV---GSINLSTSIGVAHSNE 43
++ G I + S GVA+ E
Sbjct: 212 AELPYTGEIEVGLSTGVAYCPE 233
Score = 33.1 bits (72), Expect = 6.8
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 413 SMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGY--LCLFDVDKFKNINEHFGH 261
++ A D LT R++F +L E+GG + + D+D K IN+ GH
Sbjct: 104 ALKKEAVTDPLTGLYNRRTFFRELDCRLERGGSFAVAVLDLDNMKQINDTLGH 156
>UniRef50_Q1J0V3 Cluster: Diguanylate cyclase precursor; n=1;
Deinococcus geothermalis DSM 11300|Rep: Diguanylate
cyclase precursor - Deinococcus geothermalis (strain DSM
11300)
Length = 368
Score = 39.1 bits (87), Expect = 0.10
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -2
Query: 419 LYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKG-GY-LCLFDVDKFKNINEHFGH 261
L + +A+ D LT R++ +E L AL G G+ L LFD+D FK +N+ GH
Sbjct: 190 LLAAREAAYHDALTGLANRRAAEEQLSALARSGHGFTLVLFDLDHFKAVNDLHGH 244
>UniRef50_Q1FEJ5 Cluster: GGDEF domain; n=1; Clostridium
phytofermentans ISDg|Rep: GGDEF domain - Clostridium
phytofermentans ISDg
Length = 195
Score = 39.1 bits (87), Expect = 0.10
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Frame = -2
Query: 425 KKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPE---KGGY---LCLFDVDKFKNINEHFG 264
+KL SM +A D LT + R+ D +L+ L + G L + DVD FK N+ FG
Sbjct: 9 QKLQSMAKNAEEDPLTGLLNRRGLDRNLEVLLPYCIRSGIRIGLMIVDVDNFKRYNDSFG 68
Query: 263 HLLAMKC 243
H KC
Sbjct: 69 HPQGDKC 75
>UniRef50_Q08Z79 Cluster: Ggdef family protein; n=2;
Cystobacterineae|Rep: Ggdef family protein - Stigmatella
aurantiaca DW4/3-1
Length = 292
Score = 39.1 bits (87), Expect = 0.10
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Frame = -2
Query: 446 FFSAADVKKLY--SMYNSAFLDDLTKAMGRKSFDEDL-KALPEKGGY-----LCLFDVDK 291
F + +++ Y +Y +D LT+ R+ FDE L + + Y L +FDVD
Sbjct: 114 FIAGGNIEAAYHDEIYRLTTMDGLTQVHNRRYFDEQLDREVSRSRRYERVLSLVMFDVDH 173
Query: 290 FKNINEHFGHL 258
FK+IN+ GHL
Sbjct: 174 FKHINDKRGHL 184
>UniRef50_A6VVU2 Cluster: Response regulator receiver modulated
diguanylate cyclase; n=2; Marinomonas sp. MWYL1|Rep:
Response regulator receiver modulated diguanylate
cyclase - Marinomonas sp. MWYL1
Length = 308
Score = 39.1 bits (87), Expect = 0.10
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILK 112
GD+VL +V +L Q +DKG V R+GG+EF ++ T E+ + +
Sbjct: 188 GDKVLQQVAMVLAKQA-LDKGLVARYGGEEFVILLPDHTQEDATEVAR 234
>UniRef50_A6T3X3 Cluster: Uncharacterized conserved protein; n=1;
Janthinobacterium sp. Marseille|Rep: Uncharacterized
conserved protein - Janthinobacterium sp. (strain
Marseille) (Minibacterium massiliensis)
Length = 356
Score = 39.1 bits (87), Expect = 0.10
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTL-------EELLSILKEIVHF 97
GDEVL+ V +L++ + +V+RFGG+EF V+ TL E + +++
Sbjct: 226 GDEVLILVANVLRTSFRA-QDRVFRFGGEEFVVLLRSATLADAQMVFERFRTSIEQHSFP 284
Query: 96 QVGSINLSTSIGVAH-SNECPTV 31
Q+G I + SIG A S E P V
Sbjct: 285 QIGQI--TVSIGFASISQETPVV 305
>UniRef50_A6Q8K7 Cluster: Signal transduction response regulator;
n=1; Sulfurovum sp. NBC37-1|Rep: Signal transduction
response regulator - Sulfurovum sp. (strain NBC37-1)
Length = 755
Score = 39.1 bits (87), Expect = 0.10
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDE----DLKALPEKGGY-LCLFDVDKFKNINEHFGH 261
+ +D LT+ R+ D ++K + KG + L L D+D FKNIN+ +GH
Sbjct: 597 SMIDSLTELFNRRKIDRLIDSEVKRIRTKGCFSLILIDIDNFKNINDSYGH 647
>UniRef50_A6EY51 Cluster: Response regulator receiver domain
protein; n=1; Marinobacter algicola DG893|Rep: Response
regulator receiver domain protein - Marinobacter
algicola DG893
Length = 588
Score = 39.1 bits (87), Expect = 0.10
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKG---GY---LCLFDVDKFKNINEHFGHLLAMKC 243
D LT R+ FDE L A ++ G+ L L D+D FK +N++FGHL C
Sbjct: 415 DGLTGVANRRQFDEKLAAEWQRALRHGHPLSLVLLDIDYFKRVNDNFGHLAGDDC 469
>UniRef50_A6EV43 Cluster: Sensory box protein/GGDEF domain protein;
n=1; Marinobacter algicola DG893|Rep: Sensory box
protein/GGDEF domain protein - Marinobacter algicola
DG893
Length = 611
Score = 39.1 bits (87), Expect = 0.10
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVG---- 88
GD V+ +V + LK K + R GGDE+A+I T+ + L + + ++
Sbjct: 238 GDNVIAEVGRRLKKLSVPGKDVLARIGGDEYALIVRNHTMRDSLELTASRIRQEINKPIR 297
Query: 87 ----SINLSTSIGVAH-SNECPTVERL 22
SI + S+G+ H +C T E L
Sbjct: 298 LNGHSITVGASLGICHLPGDCETTEEL 324
>UniRef50_A6AKL5 Cluster: Ggdef family protein; n=2; Vibrio
harveyi|Rep: Ggdef family protein - Vibrio harveyi HY01
Length = 513
Score = 39.1 bits (87), Expect = 0.10
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
AGDE L+ V K++ + + +D + YR GGDEF ++ EEL + L ++
Sbjct: 406 AGDEALLHVTKLVNANL-LDGDRFYRAGGDEFCILSQVTDKEELATYLDKL 455
Score = 35.9 bits (79), Expect = 0.96
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -2
Query: 422 KLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCL--FDVDKFKNINEHFGHL 258
K + A LD LT+ + R+ F+++L L FD+D+FK IN+ +GHL
Sbjct: 349 KTVELKRMAELDPLTQLLNRRVFNDNLLHYINGDVKFSLVGFDIDRFKLINDKYGHL 405
>UniRef50_A5V1I0 Cluster: Diguanylate cyclase; n=2; Roseiflexus|Rep:
Diguanylate cyclase - Roseiflexus sp. RS-1
Length = 681
Score = 39.1 bits (87), Expect = 0.10
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAV------IYTGGTLEELLSILKEIVHF 97
AGD+VL V + ++Q+ V + R+GG+EFAV I+ G + E L I E F
Sbjct: 562 AGDQVLRGVAERCRNQLRVID-IIGRYGGEEFAVALPETDIHAAGQIAERLRIAVERAPF 620
Query: 96 --QVGSINLSTSIGVA--HSNECPTVERLKMLAD 7
GSI+L+ S+G A H ++ T++ + AD
Sbjct: 621 VTDYGSISLTISVGAAVYHPDDHVTLDAVIDRAD 654
>UniRef50_A4YPK6 Cluster: Putative diguanylate cyclase (GGDEF) with
GAF and HAMP domains; n=2; Bradyrhizobium|Rep: Putative
diguanylate cyclase (GGDEF) with GAF and HAMP domains -
Bradyrhizobium sp. (strain ORS278)
Length = 648
Score = 39.1 bits (87), Expect = 0.10
Identities = 21/43 (48%), Positives = 26/43 (60%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEE 130
AGD VL V +IL++ D G RFGG+EF V+ G T EE
Sbjct: 494 AGDTVLRHVGEILRATF-ADDGVPCRFGGEEFVVLLPGATTEE 535
>UniRef50_A4BD76 Cluster: GGDEF domain protein; n=1; Reinekea sp.
MED297|Rep: GGDEF domain protein - Reinekea sp. MED297
Length = 476
Score = 39.1 bits (87), Expect = 0.10
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI--------VH 100
GD+VL + K +K ++ + + RFGG+EF ++ TLEE L+ + ++ H
Sbjct: 368 GDKVLKMMAKEMK-RVCRESDFLSRFGGEEFVLLLPQTTLEEGLTAVDKLRRHVETRPFH 426
Query: 99 FQVGSINLSTSIGVAHSNECPTVE 28
+Q +NL+ S GVA T+E
Sbjct: 427 YQNTPVNLTVSAGVAQRQVNETLE 450
Score = 36.3 bits (80), Expect = 0.73
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = -2
Query: 422 KLYSMYNSAFLDDLTKAMGRKSFDEDLKA-LPEKGGY-----LCLFDVDKFKNINEHFGH 261
+L+ + LD LT R+ FD L A L Y + + D+D FK IN+ FGH
Sbjct: 306 ELHKERQLSMLDPLTGLPNRQGFDRRLSAELARAERYDQALSIAIIDIDFFKRINDEFGH 365
Query: 260 LLAMK 246
L+ K
Sbjct: 366 LVGDK 370
>UniRef50_A4B0P2 Cluster: Putative uncharacterized protein; n=1;
Alteromonas macleodii 'Deep ecotype'|Rep: Putative
uncharacterized protein - Alteromonas macleodii 'Deep
ecotype'
Length = 798
Score = 39.1 bits (87), Expect = 0.10
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLS--------ILKEIVH 100
GDE+L K+ + D V RFGGDEF V+ T T +LL LK+I
Sbjct: 419 GDEILRACASRFKAALRGDD-TVIRFGGDEFVVV-TSTTCHKLLKKMTSRLSLSLKKIFK 476
Query: 99 FQVGSINLSTSIGVAHSNECPTVERLKMLAD 7
G ++ SIG+A S E + L AD
Sbjct: 477 TTSGDFQITASIGLASSTESMSPTELLKNAD 507
>UniRef50_A3I7J9 Cluster: Sensory box/GGDEF domain protein; n=1;
Bacillus sp. B14905|Rep: Sensory box/GGDEF domain
protein - Bacillus sp. B14905
Length = 482
Score = 39.1 bits (87), Expect = 0.10
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Frame = -2
Query: 509 CIVEKEAI-INNHFERVLDGGLFFSAA--DVKKLYSMYNSAFLDDLTKAMGRKSFDEDLK 339
C V+KE I I +R + F D KK + +A+ D LT R+ FDE+ K
Sbjct: 271 CAVQKEYINILLEIQRENYSHVLFEMEYNDHKKQFE--KNAYFDPLTNIYNRRYFDENAK 328
Query: 338 ALPEKGGY------LCLFDVDKFKNINEHFGHL 258
+ EK L + D+D FK IN+ GHL
Sbjct: 329 RMLEKAAEGNQQLALMMVDLDHFKEINDMNGHL 361
>UniRef50_A0WAT7 Cluster: Diguanylate cyclase precursor; n=1;
Geobacter lovleyi SZ|Rep: Diguanylate cyclase precursor
- Geobacter lovleyi SZ
Length = 410
Score = 39.1 bits (87), Expect = 0.10
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = -2
Query: 407 YNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
+N AF DD+T R++ +E L+ L + + + DVD FK N+ +GH
Sbjct: 231 HNMAFRDDMTGLPSRRALNELLRGLGSRYA-IAMVDVDHFKRFNDTYGH 278
>UniRef50_A0L7G7 Cluster: Response regulator receiver modulated
diguanylate cyclase; n=1; Magnetococcus sp. MC-1|Rep:
Response regulator receiver modulated diguanylate
cyclase - Magnetococcus sp. (strain MC-1)
Length = 476
Score = 39.1 bits (87), Expect = 0.10
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Frame = -2
Query: 449 LFFSAADVKKLYS----MYNSAFLDDLTKAMGRKSFDEDLKALPEK----GGY--LCLFD 300
L F+ AD+ + S + AF D LT R S + L A ++ GG + LFD
Sbjct: 267 LVFTFADIASIESHMRKLEEIAFTDGLTGVANRASLQQILNAEMQRSRRHGGTFSIILFD 326
Query: 299 VDKFKNINEHFGH 261
+D FK +N++FGH
Sbjct: 327 IDHFKQVNDNFGH 339
>UniRef50_A0KKN7 Cluster: GGDEF family protein, putative; n=2;
Aeromonas|Rep: GGDEF family protein, putative -
Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966
/ NCIB 9240)
Length = 550
Score = 39.1 bits (87), Expect = 0.10
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYT--GGTLEELLSILKEIVHFQV--- 91
GD +L V L+ G YR GGDEFAV+ T G LE + L ++HF+
Sbjct: 252 GDRLLQTVADKLQQ---AHDGHAYRLGGDEFAVVLTRADGALETRIHELVSLLHFEFVTR 308
Query: 90 -GSINLSTSIGVAHSNE 43
S +L+ +GVA + +
Sbjct: 309 ECSFDLACRLGVAKAQQ 325
>UniRef50_P46139 Cluster: Inner membrane protein yfiN; n=28;
Enterobacteriaceae|Rep: Inner membrane protein yfiN -
Escherichia coli (strain K12)
Length = 408
Score = 39.1 bits (87), Expect = 0.10
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 9/92 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFA-VIY---TGGTLEELLSILKEIVHFQVG 88
GD VL+++ K L ++ + K YR GGDEFA V+Y + ++++ S L +I +
Sbjct: 302 GDRVLIEIAKRL-AEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFD 360
Query: 87 SIN-----LSTSIGVAHSNECPTVERLKMLAD 7
N ++ SIG A + E + E+L+ LAD
Sbjct: 361 LHNGHQTTMTLSIGYAMTIEHASAEKLQELAD 392
>UniRef50_P77302 Cluster: Uncharacterized protein ydaM; n=27;
Enterobacteriaceae|Rep: Uncharacterized protein ydaM -
Escherichia coli (strain K12)
Length = 430
Score = 39.1 bits (87), Expect = 0.10
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGK-VYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSIN 79
GDEVL + + L+S KG V+R+GG+EF ++ L+ LS L E + V ++
Sbjct: 327 GDEVLCALARTLESC--ARKGDLVFRWGGEEFVLLLPRTPLDTALS-LAETIRVSVAKVS 383
Query: 78 LS------TSIGVAHSNECPTVERLKMLADE 4
+S SIGVAH +++ L D+
Sbjct: 384 ISGLPRFTVSIGVAHHEGNESIDELFKRVDD 414
>UniRef50_UPI00015ADE70 Cluster: hypothetical protein
NEMVEDRAFT_v1g225873; n=1; Nematostella vectensis|Rep:
hypothetical protein NEMVEDRAFT_v1g225873 - Nematostella
vectensis
Length = 306
Score = 38.7 bits (86), Expect = 0.14
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 410 MYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLF--DVDKFKNINEHFGHL 258
+Y A D LT R F L A GGY LF D+D FK +N+ +GHL
Sbjct: 188 LYYLAHHDHLTGIANRACFMRKLDAFRAGGGYPSLFFIDLDGFKPVNDRYGHL 240
>UniRef50_Q9RZS0 Cluster: GGDEF family protein; n=2;
Deinococcus|Rep: GGDEF family protein - Deinococcus
radiodurans
Length = 516
Score = 38.7 bits (86), Expect = 0.14
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTL---EELLSILKEIVHFQVGS 85
GD+VL + L ++P +YR GGDEF V+ + +E L I + QV +
Sbjct: 409 GDKVLRVFAETLNVELP-GGASLYRVGGDEFVVLLNSDDVPLFDEQLDIAL-LAARQVVA 466
Query: 84 INLSTSIGVAHSNECPTVERLKMLADER 1
++ S+G+AHS+E L LAD R
Sbjct: 467 GSVGVSLGMAHSHEA-AGPALVQLADAR 493
Score = 37.1 bits (82), Expect = 0.42
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGH 261
D LT A+ R++F+ED P L L D+D FK IN+ GH
Sbjct: 365 DVLTGALNRRAFEEDFPVRPAPFS-LALLDLDGFKAINDREGH 406
>UniRef50_Q9RWR1 Cluster: GGDEF family protein; n=2;
Deinococcus|Rep: GGDEF family protein - Deinococcus
radiodurans
Length = 227
Score = 38.7 bits (86), Expect = 0.14
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIV-HFQV 91
GD VL V ++L +P V R GGDE+AVI E L + E++ HFQ+
Sbjct: 72 GDRVLKVVERLLSGSLP-SGSVVGRIGGDEYAVILPETAAETALILFDEVIRHFQI 126
>UniRef50_Q92IU9 Cluster: Regulatory components of sensory
transduction system; n=12; Rickettsia|Rep: Regulatory
components of sensory transduction system - Rickettsia
conorii
Length = 450
Score = 38.7 bits (86), Expect = 0.14
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Frame = -2
Query: 404 NSAFLDDLTKAMGRKSFDEDLKALPEKGG------YLCLFDVDKFKNINEHFGH 261
N A D LT R+ FD LK + EK YL + D+D FK++N+ +GH
Sbjct: 286 NLAVKDGLTGLFNRRYFDIHLKQIIEKTNKESIKLYLLMCDIDNFKHVNDTYGH 339
Score = 34.3 bits (75), Expect = 2.9
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
AGD+VL V +ILK+ + V + RFGG+EF ++ T + + ++ + I
Sbjct: 341 AGDKVLTIVSRILKNTLRVTD-LIARFGGEEFTILLTDIDISKAIATAERI 390
>UniRef50_Q8FX54 Cluster: GAF/GGDEF domain protein; n=3;
Brucella|Rep: GAF/GGDEF domain protein - Brucella suis
Length = 391
Score = 38.7 bits (86), Expect = 0.14
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSIL 115
T GDEVL +V + L +I ++ V R GGDEF ++ GGT +E I+
Sbjct: 272 TYGHLTGDEVLKEVAQRLL-RIVCEEDTVARMGGDEFMIVLNGGTSKEQTDII 323
>UniRef50_Q8DEN6 Cluster: GGDEF domain protein; n=28;
Vibrionales|Rep: GGDEF domain protein - Vibrio
vulnificus
Length = 591
Score = 38.7 bits (86), Expect = 0.14
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -1
Query: 258 AGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSIN 79
AGDE L++V + + V R+GG+EFA++ T E L + ++I H + N
Sbjct: 465 AGDEALIQVATVFSQVVSRSSDCVARYGGEEFALLLPNTTAEGALKVAEKI-HAYIAESN 523
Query: 78 LS 73
++
Sbjct: 524 IA 525
Score = 35.1 bits (77), Expect = 1.7
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDEDLKAL-----PEKGGY-LCLFDVDKFKNINEHFGH 261
+F+D LT+ R+ FDE L L EK + L D+D FK N+ +GH
Sbjct: 412 SFMDSLTQVSNRRRFDEQLNTLWFHHAREKLPLTIMLCDIDFFKEFNDRYGH 463
>UniRef50_Q6LN46 Cluster: Putative uncharacterized protein; n=4;
Vibrionaceae|Rep: Putative uncharacterized protein -
Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 284
Score = 38.7 bits (86), Expect = 0.14
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Frame = -2
Query: 404 NSAFLDDLTKAMGRKSFDEDLK---ALPEK---GGYLCLFDVDKFKNINEHFGHL 258
N A D L+ R SF++D++ A+ E+ G + +FD+D FK +N+ +GHL
Sbjct: 132 NMAMRDHLSGLGNRSSFEQDIQHSIAMSERRDVGLVVVIFDLDNFKQVNDRYGHL 186
>UniRef50_Q5SJL9 Cluster: GGDEF domain protein; n=2; Thermus
thermophilus|Rep: GGDEF domain protein - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 750
Score = 38.7 bits (86), Expect = 0.14
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIY--TG--GTLEELLSILKEIVHFQVG 88
GD LMKV + L+ + + +++R+GGDEFA ++ TG G L+ + I G
Sbjct: 649 GDLALMKVAEALQRE-KRNGDRIFRWGGDEFAALFPHTGKEGALKAAFRYARAIEALCFG 707
Query: 87 SINLSTSIGV-AHSNECPTVERLKMLADER 1
+ L +IG+ A + T + L AD R
Sbjct: 708 GLCLGVNIGLAAFPEDGKTPDELLSAADSR 737
>UniRef50_Q3A272 Cluster: FOG: GGDEF domain protein; n=1; Pelobacter
carbinolicus DSM 2380|Rep: FOG: GGDEF domain protein -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 529
Score = 38.7 bits (86), Expect = 0.14
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Frame = -2
Query: 506 IVEKEAIINNHFERVLD-----GGLFFSAADVKKLYSMYNSAFLDD----LTKAMGRKSF 354
++ K ++ H E++LD G + D+ + N +D LTK R+S
Sbjct: 326 LLSKNKVLKIHDEKLLDTFGVLAGHVYLFVDITLEHQYKNKLLIDAHTDYLTKLNNRRSL 385
Query: 353 DEDLKALP-EKGGYLCLFDVDKFKNINEHFGH 261
+ ++ P + G L L D+D FK +N+ GH
Sbjct: 386 QDFMRKTPCQPGTALLLVDLDNFKEVNDEHGH 417
>UniRef50_Q30RR7 Cluster: Diguanylate cyclase (GGDEF domain) with
PAS/PAC sensor; n=1; Thiomicrospira denitrificans ATCC
33889|Rep: Diguanylate cyclase (GGDEF domain) with
PAS/PAC sensor - Thiomicrospira denitrificans (strain
ATCC 33889 / DSM 1351)
Length = 427
Score = 38.7 bits (86), Expect = 0.14
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI 106
GDEVL+ + K LK + D + R+GG+EF ++ TL E +I++++
Sbjct: 324 GDEVLVAIAKTLKGSLR-DNDLIARWGGEEFVIMLKNITLNEAKTIIEKV 372
>UniRef50_Q2SF23 Cluster: Predicted signal transduction protein
containing a membrane domain, an EAL and a GGDEF domain;
n=1; Hahella chejuensis KCTC 2396|Rep: Predicted signal
transduction protein containing a membrane domain, an
EAL and a GGDEF domain - Hahella chejuensis (strain KCTC
2396)
Length = 637
Score = 38.7 bits (86), Expect = 0.14
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Frame = -1
Query: 273 TLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTG--------GTLEELLSI 118
TL AGD +L V + LK+ + K V R GGDEF V+ T ++L
Sbjct: 254 TLGHDAGDSLLQTVAQRLKNCVRA-KDTVARLGGDEFTVLLTDIVDTFSVTPVATQILKA 312
Query: 117 LKEIVHFQVGSINLSTSIGV 58
LKE + + + +STSIGV
Sbjct: 313 LKEPIKLKKHEVIVSTSIGV 332
>UniRef50_Q2RGK2 Cluster: Diguanylate cyclase (GGDEF domain) with
PAS/PAC sensor; n=1; Moorella thermoacetica ATCC
39073|Rep: Diguanylate cyclase (GGDEF domain) with
PAS/PAC sensor - Moorella thermoacetica (strain ATCC
39073)
Length = 337
Score = 38.7 bits (86), Expect = 0.14
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Frame = -2
Query: 410 MYNSAFLDDLTKAMGRKSFDEDLKALPEK----GG--YLCLFDVDKFKNINEHFGH 261
+Y + D LT A R+ F E L+ E+ G L +FD+D FK+IN+HFGH
Sbjct: 261 LYRLSITDPLTGAYNRRYFLEMLEREVERIRRTGNPFSLIMFDLDHFKSINDHFGH 316
>UniRef50_Q2B6Y4 Cluster: Putative uncharacterized protein; n=1;
Bacillus sp. NRRL B-14911|Rep: Putative uncharacterized
protein - Bacillus sp. NRRL B-14911
Length = 532
Score = 38.7 bits (86), Expect = 0.14
Identities = 24/53 (45%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDED----LKALPEKGGYLC--LFDVDKFKNINEHFGHL 258
AF D LT R F E LK GG + LFD+D FKNIN+ +GHL
Sbjct: 365 AFKDGLTGIYNRTYFIEQSGRLLKEAEAAGGTMSVILFDIDYFKNINDQYGHL 417
Score = 35.5 bits (78), Expect = 1.3
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVY-RFGGDEFAVIYTGGTLEELLSILKEI--------V 103
GDE L + ++ S + G ++ R+GG+EF + G LE ++I +
Sbjct: 419 GDEALRHIARVSGSLL--GGGSIFARYGGEEFVICLPGADLESAADQAEKIRAGIEEVFL 476
Query: 102 HFQVGSINLSTSIGVAHSNECPTVERLKMLAD 7
+ G I+L+ S G A + T+ERL AD
Sbjct: 477 PSETGMISLTASFGAAEAAPGMTLERLLHNAD 508
>UniRef50_Q2B0G8 Cluster: Diguanylate cyclase; n=1; Bacillus sp.
NRRL B-14911|Rep: Diguanylate cyclase - Bacillus sp.
NRRL B-14911
Length = 355
Score = 38.7 bits (86), Expect = 0.14
Identities = 17/47 (36%), Positives = 30/47 (63%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSIL 115
GDEVL K+ + ++ ++YR+GG+EFA + G E++++IL
Sbjct: 231 GDEVLKKLGRTFMRAEKLNGCRIYRYGGEEFAFLIPGNREEKVINIL 277
Score = 38.3 bits (85), Expect = 0.18
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = -2
Query: 434 ADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGG--YLCLFDVDKFKNINEHFGH 261
+ ++KL M + D LT R++F E L + + ++ L DVD FK IN+++GH
Sbjct: 172 SQIEKLKRM---VYTDFLTGLANRRAFHEHLNLIEKTAEPCFILLADVDNFKGINDYYGH 228
Query: 260 L 258
L
Sbjct: 229 L 229
>UniRef50_Q21ED1 Cluster: GGDEF domain; n=1; Saccharophagus
degradans 2-40|Rep: GGDEF domain - Saccharophagus
degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Length = 476
Score = 38.7 bits (86), Expect = 0.14
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = -2
Query: 398 AFLDDLTKAMGRKSFDED-LKALPEKGGY-LCLFDVDKFKNINEHFGH 261
A LD LTK R+ F+E ++ + +K L + D+D FK +N+H+GH
Sbjct: 303 ARLDPLTKIYNRRGFEERAIQLMRQKRTLSLLILDIDHFKYVNDHYGH 350
Score = 32.7 bits (71), Expect = 9.0
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINL 76
GDEVL + K + I D R GG+EFAVI L EL ++ E + + S L
Sbjct: 353 GDEVLRQFSKKIAGMIR-DSDVFARIGGEEFAVILADQNL-ELAGLMAERIRATIESTEL 410
Query: 75 STS 67
S
Sbjct: 411 PVS 413
>UniRef50_Q1ZSN4 Cluster: GGDEF family protein; n=1; Vibrio angustum
S14|Rep: GGDEF family protein - Vibrio angustum S14
Length = 530
Score = 38.7 bits (86), Expect = 0.14
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = -2
Query: 389 DDLTKAMGRKSFDEDLKAL--PEKGGYLCLFDVDKFKNINEHFGHL 258
D LTK R+SF++ + + EK L D+DKFK+IN+++GH+
Sbjct: 376 DVLTKLRNRRSFNQYIDKMFNREKPFALVSIDIDKFKSINDNYGHV 421
Score = 37.9 bits (84), Expect = 0.24
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEIVH-------- 100
GD+ L+ V I+ + + K++R GGDEF++I + E+ +L +I H
Sbjct: 423 GDQALIHVATIVHDLL-AKEDKLFRLGGDEFSIITQQINVPEIEQMLFKIFHAVNNTILQ 481
Query: 99 FQVGSINLSTSIGVAHSNECPTVERLKMLAD 7
++ I S SIG A S++ VE L D
Sbjct: 482 YKGNEIYCSLSIGAAISHDDDDVETLMTRTD 512
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 741,910,603
Number of Sequences: 1657284
Number of extensions: 15621626
Number of successful extensions: 44111
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 39232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43898
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -