Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0745.Seq
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    30   0.37 
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    26   4.5  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   6.0  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    26   6.0  

>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 144 GTLEELLSILKEIVHFQVGSINLSTSIGVAHSNECPTVERLKM 16
           G   E++++   +VH  VG  + +T  G++ S   P +ERLK+
Sbjct: 702 GDDREIVALWISVVHQDVGGKDYTTKYGLSMSYILPVLERLKL 744


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 555 YHCHQCGKENNQCTNPQ 605
           Y+C+Q G + ++CT PQ
Sbjct: 39  YNCNQTGHKASECTEPQ 55


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 314 LCLFDVDKFKNINEHFGHLLAMK 246
           +C+FD+D  +N   ++ HL A+K
Sbjct: 313 VCIFDIDSLENKKFYWIHLAAVK 335


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 138 LEELLSILKEIVHFQVGSINLSTSIGVAHSNECPTVERLKMLA 10
           +E +  +L +I+H     +N+STS+  + SN     E +K+L+
Sbjct: 62  VENVEQLLSDILHDNSSPLNVSTSVS-SSSNNTAVDEIIKLLS 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,141
Number of Sequences: 5004
Number of extensions: 67107
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)