Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0745.Seq
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1048 + 10770461-10770612,10770721-10770730,10771457-107716... 31 1.2
07_03_0305 - 16475127-16476017,16476058-16478067 31 1.2
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 30 2.0
01_06_1767 + 39766350-39766508,39766602-39766654,39766763-397668... 29 4.7
09_04_0381 + 17128437-17128655,17129250-17129331,17129409-171295... 28 6.2
08_01_0447 + 3954917-3954919,3954965-3955217,3955763-3956126,395... 28 6.2
01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246 28 6.2
05_05_0087 - 22291732-22292029,22292967-22293034,22293640-222937... 28 8.3
>12_01_1048 +
10770461-10770612,10770721-10770730,10771457-10771624,
10771668-10772017,10772107-10772508,10772940-10773318,
10773801-10774046
Length = 568
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Frame = -1
Query: 276 RTLRSFAGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGG------TLEELLSIL 115
R +RS G ++ ++ + D G+VY FG D F + T +L+ L
Sbjct: 224 RIIRSLQGIRIIQAAAGAGRTMLVSDAGRVYAFGKDSFGEVEYAAQGSRVVTTPQLVESL 283
Query: 114 KEIVHFQVGSINLSTSI 64
K+I Q N T++
Sbjct: 284 KDIYIVQAAIGNFFTAV 300
>07_03_0305 - 16475127-16476017,16476058-16478067
Length = 966
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 126 LSILKEIVHFQVGSINLSTSIGVAHS-NECPTVERLKM 16
LS L + H +G +NLST+ AHS N P+++ L +
Sbjct: 183 LSRLANLQHLYLGGVNLSTAFDWAHSLNMLPSLQHLSL 220
>07_03_1474 -
26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 491 AIINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALP 330
A +NN FER L + + +++ +Y ++ LD R++FD L+ALP
Sbjct: 106 ASLNNTFERALA-----TMHKMPRVWVLYLTSLLDQRLLTRARRAFDRALRALP 154
>01_06_1767 +
39766350-39766508,39766602-39766654,39766763-39766829,
39766929-39766984,39767287-39767791,39767981-39768069,
39768678-39768768,39769052-39769177,39769256-39769513,
39769748-39770029
Length = 561
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 285 KH*RTLRSFAGDEVLMKVVKILKSQIPVDKGKVY 184
KH +L SF+GD VL KV K ++ V K Y
Sbjct: 301 KHAASLHSFSGDSVLAKVSKPSAEKVDVAKSLRY 334
>09_04_0381 +
17128437-17128655,17129250-17129331,17129409-17129564,
17129646-17130431,17130743-17131094,17131467-17131548,
17131756-17131833,17132041-17132055
Length = 589
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 148 GWNAGRVAIDSKRNRSFPGGKH*FKY 71
GW++ RV + SK NR +PG F +
Sbjct: 241 GWSSERVPLASKGNRRYPGSSMAFPF 266
>08_01_0447 +
3954917-3954919,3954965-3955217,3955763-3956126,
3956217-3956435,3957734-3957869,3958261-3958362,
3958439-3958690,3958796-3959092
Length = 541
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -2
Query: 488 IINNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDE 348
+ ++ F+ D F A DV+ L S+YN+AFL + G K DE
Sbjct: 83 VSSDMFQHFKDKEGSFVADDVRSLLSLYNAAFL----RTHGEKVLDE 125
>01_06_0301 + 28315919-28316987,28317059-28317743,28317751-28318246
Length = 749
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -2
Query: 485 INNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALP 330
+N FER L + + +++ MY +A L+ R++FD L+ALP
Sbjct: 96 LNRAFERALA-----TLHRMPRIWEMYLAALLEQRLVTRARRAFDRALRALP 142
>05_05_0087 -
22291732-22292029,22292967-22293034,22293640-22293723,
22295967-22296010,22296210-22296300,22296452-22296634,
22297594-22297637,22298122-22298355,22298452-22298712,
22298790-22298915,22298993-22299077,22299171-22299244,
22299988-22300186
Length = 596
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 195 GKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHS 49
G VY FGG++F + TG E++ L E + S G HS
Sbjct: 381 GDVYSFGGNQFGQLGTGSDQAEIVPKLVEASKLENNHAR-GVSCGARHS 428
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,116,199
Number of Sequences: 37544
Number of extensions: 431144
Number of successful extensions: 909
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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