Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0745.Seq
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20239| Best HMM Match : RanGAP1_C (HMM E-Value=3)                   31   1.2  
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)                   29   3.6  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)                29   3.6  
SB_54439| Best HMM Match : SNF (HMM E-Value=0)                         29   4.8  
SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)               28   6.4  
SB_53329| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_4828| Best HMM Match : Peptidase_C48 (HMM E-Value=3e-06)            28   8.4  

>SB_20239| Best HMM Match : RanGAP1_C (HMM E-Value=3)
          Length = 346

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 197 KVKSTASAVTNLR*FIRVERWKSCYRF*KKSFISRWE 87
           K K  ++ VT+ + F  + RWK C R   KSF++RW+
Sbjct: 219 KEKFQSNDVTSKKLFYSLLRWKHCKR---KSFVNRWK 252


>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
          Length = 444

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 252 DEVLMKVVKILKSQIP--VDKGKVYRFGGDEF 163
           + V+  +VK +K +I   +DK KVY +G +EF
Sbjct: 61  ENVIEPIVKAMKEKIDKGIDKKKVYEWGAEEF 92


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -1

Query: 174  GDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHSN 46
            GD   V+Y G  LE+L++ LK    +Q   IN +TS G    N
Sbjct: 2296 GDLETVVYRGNGLEKLVTDLKPYTLYQF-RINANTSAGPGFGN 2337


>SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)
          Length = 515

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 439 EKKSPPSSTRSKWLLMMASFSTIHD*SLCVPDRGNWAPDITA 564
           + + P    R+ W L + S++      L VP R NWA  +T+
Sbjct: 311 QHRKPKLPFRANWALKVTSYTWRQHRKLKVPFRANWALKVTS 352


>SB_54439| Best HMM Match : SNF (HMM E-Value=0)
          Length = 701

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 644 PGLYVFAYKKDVYLRVCTLIIFFAALVAVISG 549
           PG     Y+K++++  C+   FF  LV V  G
Sbjct: 261 PGYLRRGYRKEIFIAACSTFWFFIGLVMVTEG 292


>SB_44745| Best HMM Match : zf-C2H2 (HMM E-Value=2.2e-05)
          Length = 572

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 425 KKLYSMYNSAFLDDL-TKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGHLLA 252
           K LY   ++  ++ + T+ M +K+   D+K LP K     L D ++   + E F  L+A
Sbjct: 8   KDLYHFASNLIIERIPTEGMSQKALQRDIKTLPNKA---FLLDENEVTKLREDFKVLVA 63


>SB_53329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 425 KKLYSMYNSAFLDDL-TKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNINEHFGHLLA 252
           K LY   ++  ++ + T+ M +K+   D+K LP K     L D ++   + E F  L+A
Sbjct: 8   KDLYHFASNLIIERIPTEGMSQKALQRDIKTLPNKA---FLLDENEVTKLREDFKVLVA 63


>SB_4828| Best HMM Match : Peptidase_C48 (HMM E-Value=3e-06)
          Length = 512

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 63  RYWYLN*CFPPGNERFLLESIAT 131
           ++W L    PP NE F+L+S+AT
Sbjct: 283 QHWTLLVVLPPSNEMFVLDSMAT 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,890,124
Number of Sequences: 59808
Number of extensions: 486960
Number of successful extensions: 1387
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)