Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0745.Seq
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr...    32   0.35 
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ...    32   0.35 
Z83112-2|CAB05539.1|  391|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical...    29   4.3  
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.      29   4.3  
AF125964-4|ABA03109.1|  414|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF047655-3|ABD63244.1|  414|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF025465-11|AAB71024.1|  411|Caenorhabditis elegans Hypothetical...    29   4.3  
AF016422-3|AAG24173.1|  411|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC024831-4|ABD63212.1|  355|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC024819-1|AAF59589.1|  223|Caenorhabditis elegans Hypothetical ...    29   4.3  

>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
           protein K08E7.9 protein.
          Length = 1321

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 590 LIIFFAALVAVISGAQLPL-SGTQSD*S-CIVEKEAIINNHFERVLDGGLFFSAAD 429
           L++F   LVAVI+GA LPL S  Q   S   + ++ +INN+    L  G  ++  D
Sbjct: 75  LLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTD 130


>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
           protein.
          Length = 1321

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -2

Query: 590 LIIFFAALVAVISGAQLPL-SGTQSD*S-CIVEKEAIINNHFERVLDGGLFFSAAD 429
           L++F   LVAVI+GA LPL S  Q   S   + ++ +INN+    L  G  ++  D
Sbjct: 75  LLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTD 130


>Z83112-2|CAB05539.1|  391|Caenorhabditis elegans Hypothetical
           protein K02B7.2 protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 374 AMGRKSFDEDLKALPEKGGYLCLFDV 297
           ++ RKSF  D+  + +KGG +C+ D+
Sbjct: 147 SLPRKSFKPDMHPIAKKGGKICIVDL 172


>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
            protein Y75B8A.22 protein.
          Length = 1353

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = -2

Query: 443  FSAADVKKLYSMY------NSAFLDD-LTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFK 285
            FS  DV K Y         NS  L+  L K + R +FD  LK LP K   + LF V  F 
Sbjct: 844  FSNVDVLKWYVFLLNDFSKNSTELNQALVKMLHRIAFD--LK-LPIKLYQVSLFQV--FS 898

Query: 284  NINEHFGHL 258
             +NEHF HL
Sbjct: 899  KVNEHFTHL 907


>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
          Length = 1353

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = -2

Query: 443  FSAADVKKLYSMY------NSAFLDD-LTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFK 285
            FS  DV K Y         NS  L+  L K + R +FD  LK LP K   + LF V  F 
Sbjct: 844  FSNVDVLKWYVFLLNDFSKNSTELNQALVKMLHRIAFD--LK-LPIKLYQVSLFQV--FS 898

Query: 284  NINEHFGHL 258
             +NEHF HL
Sbjct: 899  KVNEHFTHL 907


>AF125964-4|ABA03109.1|  414|Caenorhabditis elegans Hypothetical
           protein W03G1.3 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 374 AMGRKSFDEDLKALPEKGGYLCLFDV 297
           ++ RKSF  D+  + +KGG +C+ D+
Sbjct: 111 SLPRKSFKPDMHPIAKKGGKICIVDL 136


>AF047655-3|ABD63244.1|  414|Caenorhabditis elegans Hypothetical
           protein C17B7.13 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 374 AMGRKSFDEDLKALPEKGGYLCLFDV 297
           ++ RKSF  D+  + +KGG +C+ D+
Sbjct: 111 SLPRKSFKPDMHPIAKKGGKICIVDL 136


>AF025465-11|AAB71024.1|  411|Caenorhabditis elegans Hypothetical
           protein K02E7.2 protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 374 AMGRKSFDEDLKALPEKGGYLCLFDV 297
           ++ RKSF  D+  + +KGG +C+ D+
Sbjct: 108 SLPRKSFKPDMHPIAKKGGKICIVDL 133


>AF016422-3|AAG24173.1|  411|Caenorhabditis elegans Hypothetical
           protein R09E12.5 protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 374 AMGRKSFDEDLKALPEKGGYLCLFDV 297
           ++ RKSF  D+  + +KGG +C+ D+
Sbjct: 108 SLPRKSFKPDMHPIAKKGGKICIVDL 133


>AC024831-4|ABD63212.1|  355|Caenorhabditis elegans Hypothetical
           protein Y55F3C.11 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 374 AMGRKSFDEDLKALPEKGGYLCLFDV 297
           ++ RKSF  D+  + +KGG +C+ D+
Sbjct: 111 SLPRKSFKPDMHPIAKKGGKICIVDL 136


>AC024819-1|AAF59589.1|  223|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.1 protein.
          Length = 223

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -2

Query: 485 INNHFERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPE 327
           +N H ER+ DG +  SAA  ++ Y        D L K   R+  D D K L E
Sbjct: 122 LNKHNERIKDGLIDISAARGEESYLQKRFKDTDFLRKISARREIDYD-KELSE 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,095,247
Number of Sequences: 27780
Number of extensions: 376477
Number of successful extensions: 863
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)