Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0745.Seq
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    24   1.2  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    24   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   8.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.6  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
 Frame = -2

Query: 422 KLYSMYNSAFLDDLTKAMG-----RK--SFDEDLKALPEKGGYLCLFDVDKFKNINEHF 267
           K Y +Y+S   DD  KA+G     RK  S    +  L E  G   L     FKN    F
Sbjct: 7   KRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTEIKF 65


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -1

Query: 243 LMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLE-ELLSILKEIVHFQVG 88
           +M+   I+KS IPV    +    G   AV+  GG  E +  ++ K  VH   G
Sbjct: 45  VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAG 97


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 376 KQWA-ENPLTKI*KRCRKKAVICACLTSINSKTLTNTSVICWR 251
           + WA  +P T   K  R++A +   +  I S  ++  +++ WR
Sbjct: 144 RYWAITDPFTYPSKMSRRRAAVLIAIVWICSSAISFPAIVWWR 186


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 461 LDGGLFFSAADVKKLYSMYNSAFLDDLTKAM 369
           L  GLF S  D+++++  YN   L DL K +
Sbjct: 276 LPEGLFASTRDLREIHLAYNG--LRDLPKGI 304


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 532  DRGNWAPDITATNAAKKIINVQTRK 606
            D  NW P + A     K  N +TR+
Sbjct: 1150 DSENWTPKMMAVEPTDKQANSKTRR 1174


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 597 LYIDYFLCRIGGSDIGCPVASIW 529
           L I  F+ R+ G +IGC V S++
Sbjct: 113 LVISSFMERMIGWEIGCDVYSVF 135


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 597 LYIDYFLCRIGGSDIGCPVASIW 529
           L I  F+ R+ G +IGC V S++
Sbjct: 113 LVISSFMERMIGWEIGCDVYSVF 135


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 183 RFGGDEFAVIYTGGTLEELL 124
           +F G+E A++Y  G    LL
Sbjct: 77  KFRGEEIAILYDPGMFPALL 96


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 96  GNERFLLESIATLPAFHPYKSPQIRHRRSG 185
           GN + L       P F   KS + RH+ +G
Sbjct: 799 GNSQSLAHQDQCCPGFTMTKSGKTRHQNTG 828


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,172
Number of Sequences: 438
Number of extensions: 4769
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)