Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0745.Seq
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 31 0.98
At1g18180.1 68414.m02260 expressed protein 31 0.98
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 29 2.3
At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive eff... 29 3.0
At5g47800.1 68418.m05904 phototropic-responsive NPH3 family prot... 29 3.9
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 28 6.9
At1g27760.3 68414.m03393 interferon-related developmental regula... 28 6.9
At1g27760.2 68414.m03394 interferon-related developmental regula... 28 6.9
At1g27760.1 68414.m03392 interferon-related developmental regula... 28 6.9
At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to ... 27 9.1
At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to ... 27 9.1
At1g70700.1 68414.m08150 expressed protein 27 9.1
At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containi... 27 9.1
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 195 GKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLSTSIGVAHS 49
GKVY FGG++F + TG E+L L + + + G + S G HS
Sbjct: 381 GKVYAFGGNQFGQLGTGTDHAEILPRLLDGQNLE-GKHAKAVSCGARHS 428
>At1g18180.1 68414.m02260 expressed protein
Length = 292
Score = 30.7 bits (66), Expect = 0.98
Identities = 23/73 (31%), Positives = 33/73 (45%)
Frame = -2
Query: 473 FERVLDGGLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVD 294
F +GG F ADV ++M+ + FL + T + SF K PE G C V
Sbjct: 124 FVNASNGGRLFQPADVIG-WTMWVAGFLIEATADQQKLSF----KKCPENKGKWCDVGVW 178
Query: 293 KFKNINEHFGHLL 255
K+ +FG +L
Sbjct: 179 KYSRHPNYFGEML 191
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 195 GKVYRFGGDEFAVIYTGGTLEELLSILKEIVHFQVGSINLST-SIGVAHS 49
G VY FGG++F + TG E L L E + + ++N+ T S G H+
Sbjct: 382 GDVYAFGGNQFGQLGTGCDQAETLPKLLEAPNLE--NVNVKTISCGARHT 429
>At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 692
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 452 GLFFSAADVKKLYSMYNSAFLDDLTKAMGRKS 357
G F+ AAD K L N A L+D++ + G S
Sbjct: 650 GCFYDAADEKNLRDAMNEALLEDVSTSFGSLS 681
>At5g47800.1 68418.m05904 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 559
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 352 TKI*KRCRKKAVICACLTSINSKTLTNTSVICW 254
TK+ + C ++ C+ SI K LT TS + W
Sbjct: 147 TKLPEWCENLGIVRKCIDSIVEKILTPTSEVSW 179
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = -3
Query: 523 RVINRVLWRKKPSLITILNAYWMAGFSFRLPMSKNSTV 410
+++++VLW +K + + + + W + F F + + S V
Sbjct: 199 QLLSKVLWNEKDAQMCLYHVSWQSDFGFCCDLDERSAV 236
>At1g27760.3 68414.m03393 interferon-related developmental regulator
family protein / IFRD protein family contains Pfam
PF05004: Interferon-related developmental regulator
(IFRD); similar to IFR1 protein GI:16580630 [Gallus
gallus]; similar to Interferon-related developmental
regulator 1 (TPA induced sequence 7) (TIS7 protein)
(SP:P19182) {Mus musculus}
Length = 441
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILK 112
G ++ + V L + + D V G+ AVIY GTLE+ + +K
Sbjct: 221 GPKIFQETVTYLSTLLEKDDRSVRIAAGEALAVIYELGTLEKFAAEVK 268
>At1g27760.2 68414.m03394 interferon-related developmental regulator
family protein / IFRD protein family contains Pfam
PF05004: Interferon-related developmental regulator
(IFRD); similar to IFR1 protein GI:16580630 [Gallus
gallus]; similar to Interferon-related developmental
regulator 1 (TPA induced sequence 7) (TIS7 protein)
(SP:P19182) {Mus musculus}
Length = 426
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILK 112
G ++ + V L + + D V G+ AVIY GTLE+ + +K
Sbjct: 206 GPKIFQETVTYLSTLLEKDDRSVRIAAGEALAVIYELGTLEKFAAEVK 253
>At1g27760.1 68414.m03392 interferon-related developmental regulator
family protein / IFRD protein family contains Pfam
PF05004: Interferon-related developmental regulator
(IFRD); similar to IFR1 protein GI:16580630 [Gallus
gallus]; similar to Interferon-related developmental
regulator 1 (TPA induced sequence 7) (TIS7 protein)
(SP:P19182) {Mus musculus}
Length = 437
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -1
Query: 255 GDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILK 112
G ++ + V L + + D V G+ AVIY GTLE+ + +K
Sbjct: 217 GPKIFQETVTYLSTLLEKDDRSVRIAAGEALAVIYELGTLEKFAAEVK 264
>At5g20960.2 68418.m02492 aldehyde oxidase 1 (AAO1) identical to
aldehyde oxidase AAO1 from Arabidopsis thaliana
[gi:3172023] isoform contains a GA-donor splice site at
intron 10
Length = 1368
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 252 DEVLMKVVKILKSQIPVDKG 193
DEVLM+ + +LK +I DKG
Sbjct: 507 DEVLMEAISLLKDEIVPDKG 526
>At5g20960.1 68418.m02491 aldehyde oxidase 1 (AAO1) identical to
aldehyde oxidase AAO1 from Arabidopsis thaliana
[gi:3172023] isoform contains a GA-donor splice site at
intron 10
Length = 1368
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 252 DEVLMKVVKILKSQIPVDKG 193
DEVLM+ + +LK +I DKG
Sbjct: 507 DEVLMEAISLLKDEIVPDKG 526
>At1g70700.1 68414.m08150 expressed protein
Length = 238
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +2
Query: 5 SSASIFKRSTVGHSFECATPILV-LKLMLPTWK*TISFRIDSNSSS 139
S+A++F+R G +F+ ATP+L+ + LPT ++ R+ S+ SS
Sbjct: 73 SAANVFRRCQFGGAFQNATPLLLGGSVPLPTHP-SLVPRVASSGSS 117
>At1g43980.1 68414.m05073 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 633
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 550 VPSCLYLVRRVINRVLWRKKPSLITILNAYWM-AGF 446
+PS LY R++NR L K P+L I++A + AGF
Sbjct: 1 MPSSLYF-SRLVNRSLLSKSPTLAKIVHAQLLEAGF 35
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,104,361
Number of Sequences: 28952
Number of extensions: 350766
Number of successful extensions: 802
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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