Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0741.Seq
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces po...    36   0.008
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    32   0.078
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce...    30   0.42 
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    29   0.73 
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    28   1.7  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    26   5.1  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   6.8  
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    25   9.0  

>SPBC3H7.07c |||phosphoserine phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = -2

Query: 134 IIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQAG 9
           I+ G  KA+ LR+ ++  G++  E +  GDG ND+ M+ ++G
Sbjct: 211 IVDGQRKASILREKREELGLNKLETMAVGDGANDLVMMAESG 252


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 146 SIDLIIPGVHKANGLRQ-LQKLW-GIDDSEVVVFGDGGNDIEMLRQAGFS 3
           + ++I P  +K   L+  L K++  I    V+ FGDG ND+ M   AG+S
Sbjct: 211 TFEIIPPNDNKGVALKNILSKIYPSISLENVLAFGDGANDVCMFELAGYS 260


>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -2

Query: 143 IDLIIPGVHKANGLRQLQK--LWGIDDSEVVVFGDGGNDIEMLRQAGFS 3
           I+LI    +K   L+ +    L  + +  V+ FGDG ND+ M   AG+S
Sbjct: 207 IELIPSNSNKGTALQYITSNILPEVKNENVISFGDGQNDLSMFAIAGWS 255


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 151 LPVWTDTIISPMASCNAFCT 210
           LPV+ D I+SP+ S  AFCT
Sbjct: 116 LPVFADHILSPILSDEAFCT 135


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 435 IARH*KHLCLRSLPSRRFQPQRQFHSN-FREERDQLII 545
           IARH  HLC+R + S     +  F  N  R E DQ +I
Sbjct: 35  IARHTVHLCVRKIFSLHPLTETDFLPNELRSEEDQTLI 72


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 463 FAHYPAAVFSHKGNFIAISGKKEIN**Y*FPL 558
           FA      +S  G FIAI GK ++   Y FPL
Sbjct: 364 FAGLTCVTWSPDGKFIAIGGKDDLVSIYSFPL 395


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 116 KANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQA 12
           KAN  R +Q+      + V   GDGGND+ M++ A
Sbjct: 750 KANMTRLIQEK---KQASVCCIGDGGNDVGMIQVA 781


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 91  RNYGE*TT--AKWWSLAMAVTILRCCVRQ 11
           RN  E T    KWWS+   V ++  CV Q
Sbjct: 157 RNTAESTNDRVKWWSILQTVILVSVCVFQ 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,857
Number of Sequences: 5004
Number of extensions: 69602
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)