Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0741.Seq
         (765 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X99211-1|CAA67601.1|  898|Drosophila melanogaster ubiquitin-spec...    31   2.3  
U35854-1|AAC47019.1|  370|Drosophila melanogaster commissureless...    29   9.2  
AE014296-2570|AAF49584.1|  370|Drosophila melanogaster CG17943-P...    29   9.2  

>X99211-1|CAA67601.1|  898|Drosophila melanogaster
           ubiquitin-specific protease protein.
          Length = 898

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -1

Query: 657 NGTFLSDQKTYNRERFMAQYQQMKATRNSLCSRQRESILSVDLFLP 520
           NG++ S   T +   +M  Y+Q+ A RN L ++ R+    +   LP
Sbjct: 416 NGSYYSSAYTSSTNAYMLMYRQVDAKRNELVAKVRDFPEHIKTLLP 461


>U35854-1|AAC47019.1|  370|Drosophila melanogaster commissureless
           protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 612 TAHGYRFFDRLRKYHSMSNAINLMLINYSPSPSAFW 719
           +AH  R  D L  ++++   I    ++Y P+P + W
Sbjct: 51  SAHDLRHIDALNSFNALLQRIGNAAVSYDPAPPSGW 86


>AE014296-2570|AAF49584.1|  370|Drosophila melanogaster CG17943-PA
           protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 612 TAHGYRFFDRLRKYHSMSNAINLMLINYSPSPSAFW 719
           +AH  R  D L  ++++   I    ++Y P+P + W
Sbjct: 51  SAHDLRHIDALNSFNALLQRIGNAAVSYDPAPPSGW 86


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,166,305
Number of Sequences: 53049
Number of extensions: 822009
Number of successful extensions: 1669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)