Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0741.Seq
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical ...    31   0.90 
Z46996-9|CAA87097.2|  400|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z49127-10|CAA88951.1|  400|Caenorhabditis elegans Hypothetical p...    28   8.4  
U00055-6|AAA50724.1|  494|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AL033535-3|CAA22133.1|  400|Caenorhabditis elegans Hypothetical ...    28   8.4  
Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical pr...    23   8.9  

>AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical
           protein Y4C6B.2a protein.
          Length = 484

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2

Query: 266 LRGYFFKFGLNLSDELIPQVQKALHEAIGDIMVSVH 159
           + GYF  +G +L+D +IP +Q    + I +I++S+H
Sbjct: 253 MSGYFV-YGSSLTDSIIPSIQNINIQTIVNILISLH 287


>Z46996-9|CAA87097.2|  400|Caenorhabditis elegans Hypothetical
           protein C34C12.6 protein.
          Length = 400

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -2

Query: 218 IPQVQKALHE--AIGDIMVSVHTGNGSIDLIIPGVHK-ANGLRQLQKLWGIDDSEV 60
           +P  +K L +  A G++  ++  GN   DL+ P +H   N L +   L  + DSE+
Sbjct: 323 VPNGKKLLWDFTASGELQFAIFRGNNRNDLVFPSLHLITNKLNEEGSLDNVSDSEI 378


>Z49127-10|CAA88951.1|  400|Caenorhabditis elegans Hypothetical
           protein VF13D12L.3 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 605 LSISK*KPQGIRFVVASGNQYYQLISFFPEIAMK 504
           L+I K K  GI +VVA G+ +Y +  ++   AMK
Sbjct: 142 LAIEKAKNAGIGWVVAKGSNHYGIAGWYALRAMK 175


>U00055-6|AAA50724.1|  494|Caenorhabditis elegans Hypothetical
           protein R02F2.8 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/62 (19%), Positives = 32/62 (51%)
 Frame = -2

Query: 260 GYFFKFGLNLSDELIPQVQKALHEAIGDIMVSVHTGNGSIDLIIPGVHKANGLRQLQKLW 81
           G +F +G  + + +IP +Q    +   ++M++VH     + ++ P + +   L ++   +
Sbjct: 267 GGYFVYGSTVGEAIIPSLQIKWIQQTVNLMIAVHVITTIVIVMSPPIQQVEQLLKVPHKF 326

Query: 80  GI 75
           G+
Sbjct: 327 GV 328


>AL033535-3|CAA22133.1|  400|Caenorhabditis elegans Hypothetical
           protein VF13D12L.3 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 605 LSISK*KPQGIRFVVASGNQYYQLISFFPEIAMK 504
           L+I K K  GI +VVA G+ +Y +  ++   AMK
Sbjct: 142 LAIEKAKNAGIGWVVAKGSNHYGIAGWYALRAMK 175


>Z71261-2|CAA95805.1|  813|Caenorhabditis elegans Hypothetical
           protein F21C3.2 protein.
          Length = 813

 Score = 23.4 bits (48), Expect(2) = 8.9
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +1

Query: 157 VWTDTIIS--PMASCNAFCTCG 216
           ++TD + S  P  SCNA  TCG
Sbjct: 485 MYTDNLYSYAPRPSCNAGPTCG 506



 Score = 22.6 bits (46), Expect(2) = 8.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 256 YPLSCQSYRRIPDGDNTFPPP 318
           Y  SCQS + +    N  PPP
Sbjct: 542 YQGSCQSGKCVAGSQNVTPPP 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,188,360
Number of Sequences: 27780
Number of extensions: 404745
Number of successful extensions: 976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)