Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0739.Seq
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q87NC2 Cluster: DNA polymerase; n=2; Vibrio|Rep: DNA po...    33   6.6  
UniRef50_Q9G8N5 Cluster: Ribosomal protein S4; n=1; Naegleria gr...    33   6.6  

>UniRef50_Q87NC2 Cluster: DNA polymerase; n=2; Vibrio|Rep: DNA
           polymerase - Vibrio parahaemolyticus
          Length = 787

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = -2

Query: 137 LTRERRDLNENTRFGVANATYLNPWDILIDKIKPVFFL 24
           LTR+ RD+   T+  +  AT   P  +LI+  KPVFF+
Sbjct: 9   LTRQARDIKGQTQIELWLATEAGPTQLLINGEKPVFFI 46


>UniRef50_Q9G8N5 Cluster: Ribosomal protein S4; n=1; Naegleria
           gruberi|Rep: Ribosomal protein S4 - Naegleria gruberi
          Length = 482

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 476 RFAAIFKKKCNEIIFYFYIFKLIREAKTLF 565
           RF  + KKK N+  F+FY+ ++ R+ K LF
Sbjct: 132 RFFILIKKKLNKKFFFFYLVQMFRKIKFLF 161


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,658,493
Number of Sequences: 1657284
Number of extensions: 13838991
Number of successful extensions: 24870
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24866
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)