Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0739.Seq
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   1.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.5  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 283 KITESQILAWPEWL 324
           K TESQ + WP W+
Sbjct: 181 KKTESQPMLWPAWV 194


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 321 PFGPSQNLGFSNFYQLMIF 265
           P G +  +GF N+Y ++ F
Sbjct: 319 PAGSNFEIGFENYYNILYF 337


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 98  FGVANATYLNPWDILIDKIKP 36
           +G+     LNP D   ++I+P
Sbjct: 445 YGIPQGVVLNPLDARCNEIRP 465


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,658
Number of Sequences: 336
Number of extensions: 4002
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)