Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0739.Seq
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   1.5  
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    26   4.5  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   7.8  

>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 565 EQSFCFTY*FKNIKIKYNFVTFFFKNCCESAG 470
           ++SFCF Y  KN ++ + F+    K    SAG
Sbjct: 19  DKSFCFKYSKKNTRLVFIFIVKMLKQLSISAG 50


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
           Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 293 NPRFWLGPNGYSTSGPPVG 349
           N  FW+G  G+ T GP  G
Sbjct: 237 NVTFWVGETGWPTDGPSYG 255


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 218 RFFFSVKLITFYYFRMKIIS**KLLNPRFWLGPNGYSTSGP 340
           ++FF++ L+ +  F++ ++     L PRF+L P  +  S P
Sbjct: 553 KYFFALGLVLWMLFQVLVLLVQDTLGPRFFL-PKKFFLSSP 592


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 98  FGVANATYLNPWDILIDKIKPVF 30
           F +  A +LNPW   +D  K +F
Sbjct: 201 FSIIYALFLNPWTGSLDPFKSIF 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,472
Number of Sequences: 5004
Number of extensions: 60364
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)