Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0739.Seq
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38840.1 68415.m04772 guanylate-binding family protein simila...    28   5.1  
At3g56570.1 68416.m06290 SET domain-containing protein low simil...    27   8.9  

>At2g38840.1 68415.m04772 guanylate-binding family protein similar
           to SP|Q01514 Interferon-induced guanylate-binding
           protein 1 (Guanine nucleotide-binding protein 1)
           (Interferon-gamma inducible protein MAG-1) {Mus
           musculus}; contains Pfam profile PF02263:
           Guanylate-binding protein, N-terminal domain
          Length = 679

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 492 LKKNVTKLYFIFIFLN*YVKQKLCSPFYENCAD 590
           L + + ++Y  F+  N Y   KLC   Y +C D
Sbjct: 465 LDEQMQEVYKNFVLANEYQSSKLCEALYTSCED 497


>At3g56570.1 68416.m06290 SET domain-containing protein low
           similarity to SP|Q43088 Ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (EC 2.1.1.127)
           {Pisum sativum}; contains Pfam profile PF00856: SET
           domain
          Length = 531

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 160 GHEVHW*AF*NI*IRRQMLPIFFFRETYHILLF*NENHKLIKITESQILAWPEWL*YVRP 339
           G E  W  +  I   ++ LP+ +  E    LL   E HKL+K  E  +L + +W   + P
Sbjct: 90  GEESPWAGYLQILPIQEDLPLVWSLEDLDSLLSGTELHKLVK--EDHVLIYEDWKENILP 147

Query: 340 TGGS 351
              S
Sbjct: 148 LTSS 151


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,810,448
Number of Sequences: 28952
Number of extensions: 303447
Number of successful extensions: 520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)