Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0738.Seq
         (823 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.9  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   5.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.1  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   6.8  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   8.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   8.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   8.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 323  WGRLKFFFCFDGVFHDPNK 267
            WG+ + F C  G+  D NK
Sbjct: 1299 WGKYEVFNCAPGLHWDNNK 1317


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 477 RVRIEFQHRLVVSER 433
           R RIE  H LV+SER
Sbjct: 261 RRRIEIAHTLVLSER 275


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 477 RVRIEFQHRLVVSER 433
           R RIE  H LV+SER
Sbjct: 261 RRRIEIAHTLVLSER 275


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 477 RVRIEFQHRLVVSER 433
           R RIE  H LV+SER
Sbjct: 261 RRRIEIAHTLVLSER 275


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +1

Query: 322 QPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 495
           Q KM N       +S  +   +  P K VI++ R L P     ++L  N      KRK
Sbjct: 15  QNKMYNVIQHSPQQSIIVSGSITQPTKTVIQSKRPLAPAPERTSVLVTNNSDLRCKRK 72


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 677 RFLPRRRQIKXAES*KGLEXQ 739
           ++L RRR+I+ AES +  E Q
Sbjct: 206 KYLTRRRRIEIAESLRLTERQ 226


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 677 RFLPRRRQIKXAES*KGLEXQ 739
           ++L RRR+I+ AES +  E Q
Sbjct: 206 KYLTRRRRIEIAESLRLTERQ 226


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 677 RFLPRRRQIKXAES*KGLEXQ 739
           ++L RRR+I+ AES +  E Q
Sbjct: 206 KYLTRRRRIEIAESLRLTERQ 226


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,617
Number of Sequences: 336
Number of extensions: 2418
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)