Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0738.Seq
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   120   3e-28
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   119   4e-28
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.8  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    27   3.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   9.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  120 bits (288), Expect = 3e-28
 Identities = 53/92 (57%), Positives = 68/92 (73%)
 Frame = +2

Query: 2   LKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXX 181
           +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE     
Sbjct: 174 IKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVR 233

Query: 182 XXXXXXXAPGGHLGRFVIWTQSAFAGLTPYSG 277
                  APGGHLGRFVIWT+SAF  L    G
Sbjct: 234 RLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFG 265



 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = +1

Query: 259 LDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLN 432
           LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K N
Sbjct: 260 LDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKN 319

Query: 433 PLTNNKAMLKLNPYAAVLK 489
           PL N   + +LNPYA   K
Sbjct: 320 PLKNKAVLSRLNPYAKAYK 338


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  119 bits (287), Expect = 4e-28
 Identities = 53/92 (57%), Positives = 68/92 (73%)
 Frame = +2

Query: 2   LKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXX 181
           +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE     
Sbjct: 174 IKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVR 233

Query: 182 XXXXXXXAPGGHLGRFVIWTQSAFAGLTPYSG 277
                  APGGHLGRFVIWT+SAF  L    G
Sbjct: 234 RLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFG 265



 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = +1

Query: 259 LDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLN 432
           LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K N
Sbjct: 260 LDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKN 319

Query: 433 PLTNNKAMLKLNPYAAVLK 489
           PL N   + +LNPYA   K
Sbjct: 320 PLKNKAVLARLNPYAKAYK 338


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +1

Query: 295 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 471
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +1

Query: 244 VRIRRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATR 423
           + ++RL+    +W     ++    +PQ K  +    + LK DEIR+        V+  + 
Sbjct: 255 ILLKRLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSD 314

Query: 424 KLN 432
           +LN
Sbjct: 315 ELN 317


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 17/54 (31%), Positives = 32/54 (59%)
 Frame = -2

Query: 477 RVRIEFQHRLVVSERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLRLGQ 316
           +V +EF+ RL + +RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,314
Number of Sequences: 5004
Number of extensions: 41630
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)