Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0738.Seq
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           93   3e-19
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    93   3e-19
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    28   7.8  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
 Frame = +2

Query: 8   AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 184
           A++D  K   S  +R GKGKMRNRR I RKGPLI++  +   + +AFRN+PGV+      
Sbjct: 180 AYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVER 239

Query: 185 XXXXXXAPGGHLGRFVIWTQSAFAGLTPYSG 277
                 APGGHLGRFVIWT+SAF  L    G
Sbjct: 240 LNLLDLAPGGHLGRFVIWTESAFKKLEEVYG 270



 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 39/87 (44%), Positives = 60/87 (68%)
 Frame = +1

Query: 253 RRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 432
           ++L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++  NK V R  ++ N
Sbjct: 263 KKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKN 322

Query: 433 PLTNNKAMLKLNPYAAVLKRKAILERA 513
           PL N  A+LKLNPY    ++ A L  A
Sbjct: 323 PLKNVAAVLKLNPYFGTARKMATLAEA 349


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
 Frame = +2

Query: 8   AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 184
           A++D  K   S  +RAGKGKMRNRR I RKGPLI++  +   + +AFRN+PGV+      
Sbjct: 179 AYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVER 238

Query: 185 XXXXXXAPGGHLGRFVIWTQSAFAGLTPYSG 277
                 APGGHLGRFVIWT+ AF  L    G
Sbjct: 239 LNLLDLAPGGHLGRFVIWTECAFKKLDEVYG 269



 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 40/87 (45%), Positives = 58/87 (66%)
 Frame = +1

Query: 253 RRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 432
           ++LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++  NK V     + N
Sbjct: 262 KKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRN 321

Query: 433 PLTNNKAMLKLNPYAAVLKRKAILERA 513
           PL N  A+LKLNPY    ++ A L  A
Sbjct: 322 PLKNVAAVLKLNPYFGTARKMAALAEA 348


>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
            2668344-2668410,2668473-2668562,2668672-2668787,
            2668999-2671924
          Length = 1170

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -1

Query: 196  QEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDI 17
            Q   L++++ LH  D   +    + L+ED + ++ + T  V      + +T+ LV+LK  
Sbjct: 937  QAENLISLKRLHMVDCQNAKQFRMCLLEDQQLAVDVVTVVVESRVARAKETVVLVYLKCY 996

Query: 16   R 14
            R
Sbjct: 997  R 997


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,044,563
Number of Sequences: 37544
Number of extensions: 324500
Number of successful extensions: 803
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)