BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0738.Seq (823 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_01_0578 + 4295386-4296489,4297394-4297507 93 3e-19 03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 93 3e-19 01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 28 7.8 >07_01_0578 + 4295386-4296489,4297394-4297507 Length = 405 Score = 92.7 bits (220), Expect = 3e-19 Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Frame = +2 Query: 8 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 184 A++D K S +R GKGKMRNRR I RKGPLI++ + + +AFRN+PGV+ Sbjct: 180 AYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVER 239 Query: 185 XXXXXXAPGGHLGRFVIWTQSAFAGLTPYSG 277 APGGHLGRFVIWT+SAF L G Sbjct: 240 LNLLDLAPGGHLGRFVIWTESAFKKLEEVYG 270 Score = 87.0 bits (206), Expect = 2e-17 Identities = 39/87 (44%), Positives = 60/87 (68%) Frame = +1 Query: 253 RRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 432 ++L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++ NK V R ++ N Sbjct: 263 KKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKN 322 Query: 433 PLTNNKAMLKLNPYAAVLKRKAILERA 513 PL N A+LKLNPY ++ A L A Sbjct: 323 PLKNVAAVLKLNPYFGTARKMATLAEA 349 >03_06_0298 - 32925441-32925998,32926371-32926730,32927161-32927230, 32927642-32927797,32929181-32929242,32929339-32929352, 32930421-32930520,32931474-32932574 Length = 806 Score = 92.7 bits (220), Expect = 3e-19 Identities = 46/91 (50%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Frame = +2 Query: 8 AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 184 A++D K S +RAGKGKMRNRR I RKGPLI++ + + +AFRN+PGV+ Sbjct: 179 AYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANVER 238 Query: 185 XXXXXXAPGGHLGRFVIWTQSAFAGLTPYSG 277 APGGHLGRFVIWT+ AF L G Sbjct: 239 LNLLDLAPGGHLGRFVIWTECAFKKLDEVYG 269 Score = 86.2 bits (204), Expect = 3e-17 Identities = 40/87 (45%), Positives = 58/87 (66%) Frame = +1 Query: 253 RRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 432 ++LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++ NK V + N Sbjct: 262 KKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRN 321 Query: 433 PLTNNKAMLKLNPYAAVLKRKAILERA 513 PL N A+LKLNPY ++ A L A Sbjct: 322 PLKNVAAVLKLNPYFGTARKMAALAEA 348 >01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895, 2668344-2668410,2668473-2668562,2668672-2668787, 2668999-2671924 Length = 1170 Score = 28.3 bits (60), Expect = 7.8 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -1 Query: 196 QEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHLKDI 17 Q L++++ LH D + + L+ED + ++ + T V + +T+ LV+LK Sbjct: 937 QAENLISLKRLHMVDCQNAKQFRMCLLEDQQLAVDVVTVVVESRVARAKETVVLVYLKCY 996 Query: 16 R 14 R Sbjct: 997 R 997 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,044,563 Number of Sequences: 37544 Number of extensions: 324500 Number of successful extensions: 803 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 783 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 801 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2256438528 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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