Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0738.Seq
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                94   1e-19
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 42/75 (56%), Positives = 52/75 (69%)
 Frame = +2

Query: 2   LKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXX 181
           + A+ D+ K   S+++RAGKGKMRNRR + RKGPLII+N DQGL +AFRN+PGVE     
Sbjct: 171 VNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVD 230

Query: 182 XXXXXXXAPGGHLGR 226
                   PGGHLGR
Sbjct: 231 RLNLLKLCPGGHLGR 245



 Score = 37.9 bits (84), Expect = 0.010
 Identities = 27/64 (42%), Positives = 33/64 (51%)
 Frame = +1

Query: 313 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 492
           NLP  ++ + D   LLK      + R P  R  RA  K NPL N   ML+LNPYA   KR
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPYAKSAKR 276

Query: 493 KAIL 504
             +L
Sbjct: 277 AEML 280


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +1

Query: 286 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 432
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_39786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 297 TKEELQPAPTEDGQH*PHTSSQV**DQEGPPCSQQTRDPCYTQIE--PAH*QQGDAETQS 470
           ++++  P P++  +H P  S Q    Q  P  SQQ R P  +Q +  P H QQ   ETQS
Sbjct: 206 SQQQRHPRPSQQQRH-PRPSQQ----QRYPRPSQQQRQPRPSQQQRYPRHNQQQTPETQS 260

Query: 471 LRGRAEEES 497
                E +S
Sbjct: 261 TTEIPETQS 269


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +1

Query: 361 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 465
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,039,851
Number of Sequences: 59808
Number of extensions: 345834
Number of successful extensions: 1214
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)