Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0738.Seq
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 103 2e-22
Z81097-14|CAB03171.2| 221|Caenorhabditis elegans Hypothetical p... 30 1.7
AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical ... 29 5.3
Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein. 28 7.0
Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical p... 28 7.0
AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical ... 28 7.0
U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6... 28 9.3
AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threon... 28 9.3
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 103 bits (247), Expect = 2e-22
Identities = 54/123 (43%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Frame = +2
Query: 11 WSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXX 190
W+DI KVY S+R RAGKGK+RNR+ Q+ GP++I+ +D RAFRNIPGV+
Sbjct: 176 WADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNVERLN 235
Query: 191 XXXXAPGGHLGRFVIWTQSAFAGL-TPYSGHGRHHQNKRRTSTCPNRRWPTLTSHVFSSL 367
APGGHLGR +IWT+SAF L T Y + ++ + P P + + FS +
Sbjct: 236 LLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVP---LPIMANSDFSRI 292
Query: 368 MRS 376
+RS
Sbjct: 293 IRS 295
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Frame = +1
Query: 253 RRLDPLFGSWKTPSKQ-KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKL 429
++LD ++G+ S Q KK +++P P MAN+D +R+++S+E+ K +RAP K +
Sbjct: 257 KKLDTIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHR 316
Query: 430 NPLTNNKAMLKLNPYAAVLKR 492
NPL + KLNPYA++L++
Sbjct: 317 NPLKKRTLLYKLNPYASILRK 337
>Z81097-14|CAB03171.2| 221|Caenorhabditis elegans Hypothetical
protein K07A1.10 protein.
Length = 221
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +1
Query: 247 RIRRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 399
RIR + FG W P + L Q + ++ K DEI+K A N
Sbjct: 168 RIRDIQEYFGYWMDPKDPRFEVMLQQKEAEEKKAVKMAKRDEIQKKRFAEN 218
>AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical
protein T28C12.3 protein.
Length = 430
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -1
Query: 205 SQLQEVQLVNIQELHTG--DVAESASQTLILVEDYEGSLTLDTTTVAHFTL 59
S L+ + ++ LH + E + + L++++ +E + TL TTVA+F+L
Sbjct: 281 SLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331
>Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 340 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 495
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 340 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 495
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 340 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 495
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6
protein.
Length = 636
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -1
Query: 232 DETSKMTSRS--QLQEVQLVNIQELHTGDV-AESASQT-LILVEDYEGSLTLDTTTVAHF 65
DE S R Q + NI + D+ +E S T ++L+ DY +L
Sbjct: 298 DEDSWKNERDVYQTNMINHENILQFVAADIWSEEDSMTKMLLITDYHELGSLSDYLCREE 357
Query: 64 TLTSTKTLRLVH 29
TLT+ + LRL+H
Sbjct: 358 TLTTDEALRLIH 369
>AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threonine
kinase SMA-6 protein.
Length = 636
Score = 27.9 bits (59), Expect = 9.3
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -1
Query: 232 DETSKMTSRS--QLQEVQLVNIQELHTGDV-AESASQT-LILVEDYEGSLTLDTTTVAHF 65
DE S R Q + NI + D+ +E S T ++L+ DY +L
Sbjct: 298 DEDSWKNERDVYQTNMINHENILQFVAADIWSEEDSMTKMLLITDYHELGSLSDYLCREE 357
Query: 64 TLTSTKTLRLVH 29
TLT+ + LRL+H
Sbjct: 358 TLTTDEALRLIH 369
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,572,669
Number of Sequences: 27780
Number of extensions: 247686
Number of successful extensions: 710
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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