Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0738.Seq
         (823 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    96   3e-20
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    95   7e-20
At5g29000.2 68418.m03590 myb family transcription factor contain...    29   3.7  
At5g29000.1 68418.m03589 myb family transcription factor contain...    29   3.7  
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote...    29   3.7  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 49/109 (44%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
 Frame = +2

Query: 8   AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 184
           A+ D  K   S  +R GKGKMRNRR I RKGPL++F  +   + +AFRN+PGVE      
Sbjct: 182 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVER 241

Query: 185 XXXXXXAPGGHLGRFVIWTQSAFAGLTPYSGHGRHHQNKRRTSTCPNRR 331
                 APGGHLGRFVIWT+SAF  L    G       K++    P  +
Sbjct: 242 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAK 290



 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 37/86 (43%), Positives = 54/86 (62%)
 Frame = +1

Query: 256 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 435
           +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDE++ V+        RA  K NP
Sbjct: 266 KLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNP 325

Query: 436 LTNNKAMLKLNPYAAVLKRKAILERA 513
           L N   M KLNPYA   KR ++L  A
Sbjct: 326 LKNLNVMFKLNPYAKTAKRMSLLAEA 351


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 94.7 bits (225), Expect = 7e-20
 Identities = 48/109 (44%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
 Frame = +2

Query: 8   AWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LTRAFRNIPGVEXXXXXX 184
           A+ D  K   S  +R GKGKMRNRR I RKGPL+++  +   + +AFRN+PGVE      
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240

Query: 185 XXXXXXAPGGHLGRFVIWTQSAFAGLTPYSGHGRHHQNKRRTSTCPNRR 331
                 APGGHLGRFVIWT+SAF  L    G       K++    P  +
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAK 289



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 40/87 (45%), Positives = 57/87 (65%)
 Frame = +1

Query: 256 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 435
           +L+ ++GS++ PS++KK + LP+ KM N DL R++ SDEI+ V+    K   RA  K NP
Sbjct: 265 KLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNP 324

Query: 436 LTNNKAMLKLNPYAAVLKRKAILERAE 516
           L N   MLKLNPYA   KR ++L  A+
Sbjct: 325 LKNLNVMLKLNPYAKTAKRMSLLAEAQ 351


>At5g29000.2 68418.m03590 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 413

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 209 GGHLGRFVIWTQSAFAGLTPYSGHGRHHQNKRRTSTCPNRR 331
           GG+ G ++  + S +  ++    HGR+ QN+   ST P  R
Sbjct: 55  GGNSGGYLFPSSSGYCNVSAVLPHGRNLQNQPPVSTVPRDR 95


>At5g29000.1 68418.m03589 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 370

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 209 GGHLGRFVIWTQSAFAGLTPYSGHGRHHQNKRRTSTCPNRR 331
           GG+ G ++  + S +  ++    HGR+ QN+   ST P  R
Sbjct: 12  GGNSGGYLFPSSSGYCNVSAVLPHGRNLQNQPPVSTVPRDR 52


>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase TMKL1, Arabidopsis
           thaliana, PID:E353150
          Length = 757

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -1

Query: 232 DETSKMTSRSQLQEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTS 53
           DETS  TS S ++  Q V       G   + +SQT ++  D E  L LDT   A   +  
Sbjct: 421 DETS--TSESDVENQQTVQAFTRTDGGQLKQSSQTQLVTVDGETRLDLDTLLKASAYILG 478

Query: 52  TKTLRLVH 29
           T    +V+
Sbjct: 479 TTGTGIVY 486


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,257,669
Number of Sequences: 28952
Number of extensions: 242277
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)