Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0737.Seq
         (829 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    25   0.97 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    25   0.97 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    25   0.97 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    24   1.7  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    23   3.0  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.9  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    22   5.2  
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    22   6.8  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 636 PLLKKRGLPTSKGRK-TVLSGADGPLRETIHPNQVFG 743
           P LK+  L T +    TV   ADG L  TI  + VFG
Sbjct: 137 PDLKELNLDTKESYALTVAETADGRLNATIIADNVFG 173


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 694 PDKTVFRPFDVGSPRFFNSGLLFQTGTTLNP 602
           P  +VF   +   P F +SG++   GT L P
Sbjct: 57  PPHSVFAANNAEFPEFVHSGMVHNDGTQLMP 87


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 694 PDKTVFRPFDVGSPRFFNSGLLFQTGTTLNP 602
           P  +VF   +   P F +SG++   GT L P
Sbjct: 57  PPHSVFAANNAEFPEFVHSGMVHNDGTQLMP 87


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 399 PLSPAGVIAKRPAPIALPNSCA 464
           P  P GV  KR  P AL  +CA
Sbjct: 52  PCPPQGVDLKRVLPEALQTNCA 73


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 310 LTIGRIGYRAPPRGTISSGHHAA 242
           LTI + GY  P    I+S HH A
Sbjct: 58  LTIIQNGYGLPGHTIIASNHHLA 80


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 225 TSQLKKPLRVEFIGEEAEDAGG 160
           TS +   + V+F+GE  +D+GG
Sbjct: 72  TSGVIPGVAVDFLGENNDDSGG 93


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 405 SPAGVIAKRPAPIALPNSCA 464
           +P G   KR  P AL N CA
Sbjct: 54  TPEGEELKRDIPEALQNECA 73


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 405 SPAGVIAKRPAPIALPNSCA 464
           +P+G   K+  P AL N CA
Sbjct: 52  TPSGEELKKDIPDALKNECA 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,580
Number of Sequences: 336
Number of extensions: 4286
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)