Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0737.Seq
(829 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 41 0.001
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 40 0.002
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 38 0.013
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 33 0.28
05_03_0258 - 11153709-11156090 31 1.1
09_02_0036 + 3217163-3217584,3217752-3218322 30 2.0
07_03_0776 + 21417476-21417691,21417775-21417855,21417941-214183... 28 7.9
02_05_0574 - 30086264-30086367,30087653-30087746,30088293-300885... 28 7.9
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = -2
Query: 258 QDTMLQISNHDTSQLKKPLRVEFIGEEAEDAGGVKKEFFMLLLKEIFD 115
+D+ Q+ + LK L V+F GEE DAGG+ +E++ LL + IFD
Sbjct: 3287 EDSYNQLRLRRSQDLKGRLTVQFQGEEGIDAGGLTREWYQLLSRVIFD 3334
>05_01_0431 +
3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -2
Query: 258 QDTMLQISNHDTSQLKKPLRVEFIGEEAE-----DAGGVKKEFFMLLLKEIFDPVYGMFK 94
+D Q+S LK P+RV F+ E D GG+ K+F + + FD YG+FK
Sbjct: 678 EDAFDQLSMLSEEDLKGPIRVVFVNEHGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFK 737
Query: 93 QSEE 82
++ +
Sbjct: 738 ETAD 741
>03_05_0712 - 27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Frame = -2
Query: 222 SQLKKPLRVEFIGE----EAE-DAGGVKKEFFMLLLKEIFDPVYGMFKQSEETNMIWFSN 58
S+LK + V F+ E EA D GG+ KEF L K F P YG+F Q+ ++ +
Sbjct: 829 SKLKSCIHVSFVSECGLPEAGLDYGGLSKEFLTDLSKAAFSPEYGLFSQASASDSSLIPS 888
Query: 57 N 55
N
Sbjct: 889 N 889
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 33.1 bits (72), Expect = 0.28
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = -2
Query: 222 SQLKKPLRVEFIGEEAEDAGGVKKEFFMLLLKEIFDPVYGMFKQSEETNMIWFSNNPFED 43
S+L+ L +EF EEA GV +E+F ++ + +F P +F +F N
Sbjct: 545 SELRSGLFMEFKNEEA-TGPGVLREWFCMVCQALFSPQQVLFSPCPSDRQRFFLNGTSAV 603
Query: 42 D---VMYYVI-GAIYGLA 1
D + Y++ G I GLA
Sbjct: 604 DPLHLKYFIFSGRIIGLA 621
>05_03_0258 - 11153709-11156090
Length = 793
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 501 NINAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 367
N+N YNL F + + + R +L ++++ GC R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 315 ITIHWPSFYNVV-TGKTLALPNLIALQH 395
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>07_03_0776 +
21417476-21417691,21417775-21417855,21417941-21418342,
21418457-21418621,21418729-21419460,21419542-21419748
Length = 600
Score = 28.3 bits (60), Expect = 7.9
Identities = 29/109 (26%), Positives = 44/109 (40%)
Frame = -2
Query: 480 PFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQSRRCKTTASEL*YDSL* 301
P +Q R R+ + LL A G RRL + + S R + A+E S
Sbjct: 11 PVRLQQRWTCRSRAASPAPLLPPPATGRRRRRRLVADSQKTAASLRVRAIAAESEQAS-- 68
Query: 300 GELGTGPPLEEPYRQDTMLQISNHDTSQLKKPLRVEFIGEEAEDAGGVK 154
L PPL ++ ++N+ + PL V E EDA G++
Sbjct: 69 -PLPEPPPLLTEEEEEEEKMLANYVPVYVMLPLGVVTAENELEDAAGLR 116
>02_05_0574 -
30086264-30086367,30087653-30087746,30088293-30088555,
30089122-30089202,30089293-30089422,30089545-30089730,
30090013-30090138
Length = 327
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -2
Query: 360 FSQSRRCKTTASEL*YDSL*GELGTGPPLEEPYRQDTMLQISNHDTSQLKKPLRVEF 190
FS S C + +L + L P + Y+Q T S L+KPL V+F
Sbjct: 194 FSHSFLCTVKSGDLEWLPEGSRLPLASPAQSRYKQKTYTSFSQSQKDILEKPLGVKF 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,323,455
Number of Sequences: 37544
Number of extensions: 497619
Number of successful extensions: 1263
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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