Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0737.Seq
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical...    88   8e-18
AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical ...    52   4e-07
AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain pro...    48   8e-06
AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain pro...    48   8e-06
Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical pr...    44   1e-04
Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    44   1e-04
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    40   0.002
AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP ubiquit...    40   0.002
U41107-7|AAY55831.1|   38|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.1 protein.
          Length = 1019

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 39/87 (44%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
 Frame = -2

Query: 255 DTMLQISNHDTSQLKKPLRVEFIGEEAEDAGGVKKEFFMLLLKEIFDPVYGMFKQSEETN 76
           DTM Q++    S L+KPL+V   GE+A+DAGGV+KEFF+L++++I    YGMF + EE++
Sbjct: 679 DTMNQMAGLSESDLQKPLKVNIAGEDADDAGGVRKEFFILVMRKILQSDYGMFSEDEESH 738

Query: 75  MIWFSNNPFE--DDVMYYVIGAIYGLA 1
           ++WFS  P E  D   ++ +G + GL+
Sbjct: 739 LVWFSGLPSEFCDREQFHQLGRLVGLS 765


>AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical
           protein Y92H12A.2 protein.
          Length = 724

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
 Frame = -2

Query: 258 QDTMLQISNHDTSQLKKPLRVEFIGEEAEDAGGVKKEFFMLLLKEIFDPVYGMFKQSEET 79
           +D+   I +     L+  L +EF GE   D GGV +E+F LL  +IF+P YG+F+ S   
Sbjct: 402 EDSYRHIMDKKDYDLRNKLWIEFFGETGLDYGGVTREWFFLLSHQIFNPYYGLFEYSATD 461

Query: 78  NMIWFSN------NPFEDDVMYYVIGAIYGLA 1
           N     N      NP E    ++ IG I G+A
Sbjct: 462 NYTLQINPHSEACNP-EHLSYFHFIGRIIGMA 492


>AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform b
           protein.
          Length = 792

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 21/61 (34%), Positives = 36/61 (59%)
 Frame = -2

Query: 258 QDTMLQISNHDTSQLKKPLRVEFIGEEAEDAGGVKKEFFMLLLKEIFDPVYGMFKQSEET 79
           +D+  +I   +   L++ L ++F GEE  D GGV +E+F LL  E+ +P+Y +F  +   
Sbjct: 448 EDSFQEIMRKNAVDLRRRLYIQFRGEEGLDYGGVAREWFFLLSHEVLNPMYCLFMYAGNN 507

Query: 78  N 76
           N
Sbjct: 508 N 508


>AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform a
           protein.
          Length = 794

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 21/61 (34%), Positives = 36/61 (59%)
 Frame = -2

Query: 258 QDTMLQISNHDTSQLKKPLRVEFIGEEAEDAGGVKKEFFMLLLKEIFDPVYGMFKQSEET 79
           +D+  +I   +   L++ L ++F GEE  D GGV +E+F LL  E+ +P+Y +F  +   
Sbjct: 450 EDSFQEIMRKNAVDLRRRLYIQFRGEEGLDYGGVAREWFFLLSHEVLNPMYCLFMYAGNN 509

Query: 78  N 76
           N
Sbjct: 510 N 510


>Z46793-4|CAA86773.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -2

Query: 255 DTMLQISNHDTSQLKKP-LRVEFIGEEAEDAGGVKKEFFMLLLKEIFDPVYGMFK 94
           D    I N D   LKK  L + F GE A D GG+ +EFF+LL +E+F P  G F+
Sbjct: 532 DAFRIILNVDPFVLKKSRLHIRFEGELALDYGGLSREFFILLSRELFHPKNGYFE 586


>Z34800-5|CAA84325.1|  889|Caenorhabditis elegans Hypothetical
           protein F45H7.6 protein.
          Length = 889

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -2

Query: 255 DTMLQISNHDTSQLKKP-LRVEFIGEEAEDAGGVKKEFFMLLLKEIFDPVYGMFK 94
           D    I N D   LKK  L + F GE A D GG+ +EFF+LL +E+F P  G F+
Sbjct: 532 DAFRIILNVDPFVLKKSRLHIRFEGELALDYGGLSREFFILLSRELFHPKNGYFE 586


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/53 (35%), Positives = 33/53 (62%)
 Frame = -2

Query: 255  DTMLQISNHDTSQLKKPLRVEFIGEEAEDAGGVKKEFFMLLLKEIFDPVYGMF 97
            D+  ++     S+ K    + F GEE +DAGG+ +E+F ++ +EIF+P Y +F
Sbjct: 3832 DSFRELFRLRPSEWKNRFYIIFQGEEGQDAGGLLREWFSVITREIFNPNYALF 3884


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
           protein Y39A1C.2 protein.
          Length = 1066

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
 Frame = -2

Query: 258 QDTMLQISNHDTSQLKKPLRVEFIGEEA-EDAG----GVKKEFFMLLLKEIFDPVYGMFK 94
           +D    +S      LK  +RV+F+ E+  ++AG    GV KEF  L LK++FDP   +F 
Sbjct: 694 EDGFNHLSKLTIPALKSTIRVKFVNEQGLDEAGIDQDGVFKEFLELTLKKVFDPQLNLFS 753

Query: 93  QSEETNMIWFSNNPFEDD--VMYYVIGAIYGLA 1
            +    +     +   DD   ++  +G + G A
Sbjct: 754 TTSTGVLYPSPTSSLHDDHLALFTFVGRMLGKA 786


>AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP
           ubiquitin-protein ligase protein.
          Length = 655

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
 Frame = -2

Query: 258 QDTMLQISNHDTSQLKKPLRVEFIGEEA-EDAG----GVKKEFFMLLLKEIFDPVYGMFK 94
           +D    +S      LK  +RV+F+ E+  ++AG    GV KEF  L LK++FDP   +F 
Sbjct: 282 EDGFNHLSKLTIPALKSTIRVKFVNEQGLDEAGIDQDGVFKEFLELTLKKVFDPQLNLFS 341

Query: 93  QSEETNMIWFSNNPFEDD--VMYYVIGAIYGLA 1
            +    +     +   DD   ++  +G + G A
Sbjct: 342 TTSTGVLYPSPTSSLHDDHLALFTFVGRMLGKA 374


>U41107-7|AAY55831.1|   38|Caenorhabditis elegans Hypothetical
           protein F55C12.2 protein.
          Length = 38

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 341 VKRRPVNCNTTHYRANWVPGPPSRNHIVRTPCC 243
           +K+   NC    Y+ +W PG P     +   CC
Sbjct: 1   MKQALANCGKPEYQYDWEPGIPLNYMTMEVACC 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,326,580
Number of Sequences: 27780
Number of extensions: 415921
Number of successful extensions: 979
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)