Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0737.Seq
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 204 AVSSVVKCHGCLSAAWCPDDMVPR 275
           A+SS+    GCL   W PD  + R
Sbjct: 187 ALSSLFS-KGCLVGTWSPDPAINR 209


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 204 AVSSVVKCHGCLSAAWCPDDMVPR 275
           A+SS+    GCL   W PD  + R
Sbjct: 187 ALSSLFS-KGCLVGTWSPDPAINR 209


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 204 AVSSVVKCHGCLSAAWCPDDMVPR 275
           A+SS+    GCL   W PD  + R
Sbjct: 187 ALSSLFS-KGCLVGTWSPDPAINR 209


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 41  SSSNGLFENQIMFVSSDCLNIPY 109
           +  N  FENQ+ FVS   +   Y
Sbjct: 461 TKQNTAFENQLQFVSDAVMAFAY 483


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 127 GNI*SRIRYVQAIRGDEH 74
           GNI   +RY++ +RG ++
Sbjct: 10  GNISDELRYLEKVRGPKY 27


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 353 SHDVVKRRPVNCNTTHYRANWVPGP 279
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,158
Number of Sequences: 438
Number of extensions: 5212
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)