Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0736.Seq
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   1.9  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   2.5  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   4.4  
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||...    24   5.9  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   7.8  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    24   7.8  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     24   7.8  

>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = -1

Query: 176 CACSTQQY*IYN----VSSQIQYRRDKRAREREKSDKR*KLRTIECMHAYIYINK 24
           C  S  Q  IYN    +    Q RRD +  +R K+D+    +++   H  + + K
Sbjct: 796 CKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSKNDEESDGKSLSAGHVLMQLRK 850


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 8/30 (26%), Positives = 20/30 (66%)
 Frame = +2

Query: 20  FIYLYIYTHAYIRSFLIFIVYPISHALARV 109
           F+YLY+    +I  FL+++++  + ++A +
Sbjct: 196 FLYLYVLFTYFISIFLLYVLFSSTKSIADI 225


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 7   CKYFIYLFIYIYACIHSIVLNF 72
           C YFIY+ I ++ C +   + F
Sbjct: 143 CLYFIYIAIGVFGCSYIYTVTF 164


>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 162 RTARARQHTHKTIRALQNTITDTEIT 239
           + A+  QH+   + +LQN++ +T +T
Sbjct: 112 KPAQMNQHSENVVVSLQNSLANTSMT 137


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 7   CKYFIYLFIYIYACIHSIVLNFY 75
           C Y +++ I +Y C+    L FY
Sbjct: 345 CMYLVFINILLYICMVGYPLIFY 367


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = -2

Query: 199  IVLCVCCRARAVRSSIRYIMSAVRFNIVATNARESVR 89
            I+ CVCCR   +  S  Y+  + + + V   + ++++
Sbjct: 933  ILQCVCCRFNLIIGSEYYVPQSHQSDSVNLTSNDAIK 969


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 41  THAYIRSFLIFIVYPISHALARVCRD 118
           +H  I +FLI  +  + HA A +C++
Sbjct: 900 SHFCISNFLILFITALEHASAILCKN 925


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 930,190
Number of Sequences: 5004
Number of extensions: 12583
Number of successful extensions: 41
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)