Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0736.Seq
         (347 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7447| Best HMM Match : CHGN (HMM E-Value=0)                         31   0.34 
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   1.8  
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)             27   5.5  
SB_59799| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)                 26   7.3  
SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               26   7.3  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  

>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
          Length = 918

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 69  FLSFIRFLTLSRAFVATILNLTADIIYLILLRTARARQHTHKT-IRALQNTITDTEI 236
           + +F+RF+   + F +  LNL AD+  LI+     A  H HK+ I+  Q    + E+
Sbjct: 485 YSTFVRFM---KTFESVCLNLRADVKLLIVYFPEVAESHQHKSLIKKYQTRYPEAEL 538


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -2

Query: 235 ISVSVMVFCSARIVLC----VCCRARAVRSSIRYIMSAVR 128
           ++ +V+V CS R+  C    VCC  R V  S R   + +R
Sbjct: 365 VAYAVVVCCSCRVACCSCRVVCCSCRVVCCSCRVAHAVLR 404


>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
          Length = 1496

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 81  IRFLTLSRAFVATILNLTADIIYLIL 158
           +RF T SR F A+ + L+ DII+ I+
Sbjct: 712 LRFFTNSRIFTASRIILSLDIIFFIV 737


>SB_59799| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
          Length = 323

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 11  NILFIYLYIYTHAYIRSFLIFIVYPI 88
           +I+  Y Y+    Y+ SF+ FIVY +
Sbjct: 239 SIVVFYPYLVALTYVNSFINFIVYAL 264


>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 418

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +2

Query: 17  LFIYLYIYTHAYIRSFLIFIVYPISHALARVCR 115
           +++Y+Y+Y + Y+  ++   VY   +  A + R
Sbjct: 269 VYVYVYVYVYVYVYVYVYVYVYVYVYGSASIDR 301


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 5   YVNI-LFIYLYIYTHAYIRSFLIFIVYPISH 94
           Y+ I ++IY+YIYT+ Y  ++     Y  ++
Sbjct: 16  YIYIYIYIYIYIYTYTYTYTYTYTYTYTYTY 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,025,770
Number of Sequences: 59808
Number of extensions: 100788
Number of successful extensions: 364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)