Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0736.Seq
         (347 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens ...    31   0.99 
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    29   3.0  
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    29   3.0  

>AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44225 fis, clone THYMU3006168. ).
          Length = 262

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +2

Query: 5   YVNILFIYLYIYTH--AYIRSFLIFIVYPISHALARVC 112
           Y++I++ Y+YI+ H  AY+  F+   ++   ++ ARVC
Sbjct: 59  YIHIIYTYMYIHMHAYAYMCVFICTHMHTYVYSYARVC 96


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 23  IYLYIYTHAYIRSFLIFIVYPISHALARVCRDDIESDC 136
           +Y+ + THAYI + +   VY  ++     CR  I + C
Sbjct: 251 VYVCVCTHAYIHTHVCVCVYTYTYMYTLWCRGTIIAHC 288


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
          cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 17 LFIYLYIYTHAYIRSFLIFIVY 82
          +FIY+YIY + YI  ++ F ++
Sbjct: 21 IFIYIYIYVYVYIYLYIYFYIF 42


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,248,764
Number of Sequences: 237096
Number of extensions: 376665
Number of successful extensions: 833
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)