Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0736.Seq
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    27   3.7  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      27   3.7  
AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine re...    26   6.4  
AF036704-4|ABA00184.1|  352|Caenorhabditis elegans Hypothetical ...    26   8.5  

>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 239 CNFGVSNGIL*CAYSFMRVLPCACSTQQY 153
           CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 173 CNFVPSNHQNQCQFSFVLVISCADQSIQY 201


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 239 CNFGVSNGIL*CAYSFMRVLPCACSTQQY 153
           CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 137 CNFVPSNHQNQCQFSFVLVISCADQSIQY 165


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 191 MRVLPCACSTQQY*IYNVSSQIQYRR 114
           ++V+PC  +  Q     VS+Q+QYRR
Sbjct: 3   LKVIPCTLTKNQEVFKCVSAQLQYRR 28


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 191 MRVLPCACSTQQY*IYNVSSQIQYRR 114
           ++V+PC  +  Q     VS+Q+QYRR
Sbjct: 3   LKVIPCTLTKNQEVFKCVSAQLQYRR 28


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 191 MRVLPCACSTQQY*IYNVSSQIQYRR 114
           ++V+PC  +  Q     VS+Q+QYRR
Sbjct: 3   LKVIPCTLTKNQEVFKCVSAQLQYRR 28


>AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein9 protein.
          Length = 293

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = +3

Query: 93  TLSRAFVATILNLTADIIYLILLRTARARQHTH-----KTIRALQNTIT 224
           T+ + F+  I N+   ++Y+IL+RT   ++ T      KTI+ LQ +++
Sbjct: 164 TVYKLFIIFI-NIIVTVVYVILIRTFHLKKQTGNLTSLKTIKGLQFSVS 211


>AF036704-4|ABA00184.1|  352|Caenorhabditis elegans Hypothetical
           protein ZK185.5 protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 238 VISVSVMVFCSA-RIVLCVCCRARAVRSSIRYIMSAVRFNIVATNARESVRNRINDK 71
           + ++S+M+  SA +I+LC+ C  R   SSI  +++    N +AT+    +   + D+
Sbjct: 178 ITTISIMLGGSAVKIILCLICYKRGSSSSI--VLAMDMRNDIATSIVAIICATVGDR 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,198,286
Number of Sequences: 27780
Number of extensions: 72259
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)