Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0734.Seq
         (638 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   2.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   6.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   6.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   6.6  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 342 VATLFLNT*NRKYYFICIIMIDLTI 268
           +  L  N  NRKYY++ +  ++L+I
Sbjct: 43  LTNLTYNNTNRKYYWLNVCCLNLSI 67


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 382 TFNWQQTAKNAPK 344
           T+ W Q  +N PK
Sbjct: 196 TYKWMQVKRNVPK 208


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 382 TFNWQQTAKNAPK 344
           T+ W Q  +N PK
Sbjct: 196 TYKWMQVKRNVPK 208


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -2

Query: 382 TFNWQQTAKNAPK 344
           T+ W Q  +N PK
Sbjct: 196 TYKWMQVKRNVPK 208


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,387
Number of Sequences: 336
Number of extensions: 1776
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)