Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0733.Seq
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004998D3 Cluster: phospholipid-transporting P-type...    34   4.0  
UniRef50_Q54SU7 Cluster: Putative uncharacterized protein; n=1; ...    33   9.3  

>UniRef50_UPI00004998D3 Cluster: phospholipid-transporting P-type
           ATPase; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
           phospholipid-transporting P-type ATPase - Entamoeba
           histolytica HM-1:IMSS
          Length = 1050

 Score = 33.9 bits (74), Expect = 4.0
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +1

Query: 436 IKKYERLTKIIIFYNTNKLYRSVVMLVKYCLF 531
           I++++ LTK+I+FY  N  Y+ +  L+K+C +
Sbjct: 739 IRRFKHLTKLILFYGRNGKYQ-ITTLIKFCFY 769


>UniRef50_Q54SU7 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 488

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
 Frame = +1

Query: 370 NSRYTTEVF-QKCV*NTL-----FALHLIKKYERLTKIIIFYNTNKLYRSVVMLVKYCLF 531
           NS++   VF  K + N+L     F + LI  Y  + K I+ + +NKL R+V  LV YC  
Sbjct: 39  NSKFFQNVFISKSIGNSLLNSTEFWIILISSY--IFKDILIFTSNKLDRNVYNLVYYCAS 96

Query: 532 SCR 540
            C+
Sbjct: 97  QCK 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,841,933
Number of Sequences: 1657284
Number of extensions: 9103909
Number of successful extensions: 16307
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16294
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)