Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0733.Seq
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.61 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.3  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    22   5.7  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   5.7  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   5.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.7  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.6  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   7.6  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 379 YTTEVFQKCV*NTLFALHLIKKYERLTKIII 471
           YTT   +K +   +FALH  + Y ++TKIII
Sbjct: 642 YTTT--EKELLGVIFALHKFRIYIQVTKIII 670


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 417 CVSNTFLKNFSCIPRIMSFIC 355
           C  N    N SC+ RI  F C
Sbjct: 110 CSPNPCRNNGSCVDRIADFEC 130


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 128 VNYFHIIWAFSFKCVFNVILF 190
           ++YF   WAFS  C    I++
Sbjct: 323 LDYFFTFWAFSNACEVMAIVW 343


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 197 LNDHHIFRFSVTVTSFF 247
           + DH++ R  VT+  FF
Sbjct: 1   MTDHNLLRLIVTIGEFF 17


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 128 VNYFHIIWAFSFKCVFNVILF 190
           ++YF   WAFS  C    I++
Sbjct: 323 LDYFFTFWAFSNACEVMAIVW 343


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 108 LSTATELLITFI*SGRFHLNVFLM*FYF 191
           LS    L+I F+  G F LNV  +  YF
Sbjct: 558 LSIGPPLVIPFLLFGGFFLNVSSIPIYF 585


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 108 LSTATELLITFI*SGRFHLNVFLM*FYF 191
           LS    L+I F+  G F LNV  +  YF
Sbjct: 558 LSIGPPLVIPFLLFGGFFLNVSSIPIYF 585


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 145 YMKVINNSVAVESI*T 98
           Y+ V+NNSV  ES+ T
Sbjct: 305 YLCVVNNSVGGESVET 320


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 418 LFALHLIKKYERLTKII 468
           +FAL  +KK+ RL K++
Sbjct: 16  IFALLPVKKHHRLEKLV 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,085
Number of Sequences: 336
Number of extensions: 2854
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)