Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0733.Seq
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    29   4.4  
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z77661-1|CAB01186.1|  341|Caenorhabditis elegans Hypothetical
           protein F40G12.1 protein.
          Length = 341

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
 Frame = -1

Query: 423 KKCVSNTFLKNFSCIPRI-MSFICVS*CQNTIYVKQ-ALIKCKI-IVIQLIKFYVDNLIT 253
           ++C+++ F+KN+    +I +S + +S     ++    A I+C I +V+ +I F++ N+I 
Sbjct: 126 ERCLASFFVKNYEKSRKIWVSLMILSIFHPLVFASAIAYIQCWIPVVVHVISFFIVNIIG 185

Query: 252 YLKNEVTVTENRK 214
           Y+   +  + N K
Sbjct: 186 YIGIHICYSYNIK 198


>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 364 RHNSRYTTEVFQKCV*NTLFALHLIKKYERLTKIIIFYNTNKLYRSVV 507
           + N +  T+  Q  V N LF+   + + E  T ++IF N NKL+ S+V
Sbjct: 446 KKNLKICTDAVQILVGNGLFSNEQLAQTE--TWVMIFSNANKLFHSMV 491


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 364 RHNSRYTTEVFQKCV*NTLFALHLIKKYERLTKIIIFYNTNKLYRSVV 507
           + N +  T+  Q  V N LF+   + + E  T ++IF N NKL+ S+V
Sbjct: 446 KKNLKICTDAVQILVGNGLFSNEQLAQTE--TWVMIFSNANKLFHSMV 491


>Z77665-1|CAB01220.1|  339|Caenorhabditis elegans Hypothetical
           protein K02E11.2 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
 Frame = -1

Query: 423 KKCVSNTFLKNFSCIPRI-MSFICVS*CQNTIYVKQ-ALIKCKI-IVIQLIKFYVDNLIT 253
           ++C++   + N+    +I +S I +S     ++    A I+C + +V  +I F+V N+I 
Sbjct: 124 ERCLATFLVANYEKSRKIWVSLIILSIFHPLVFASAFAYIQCWLPVVFHVISFFVVNIIG 183

Query: 252 YLKNEVTVTENRKM**SFN*KNKIT 178
           Y+  ++    N K    F+ K ++T
Sbjct: 184 YVGVQICFLYNTKRYKLFSQKPRMT 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,771,035
Number of Sequences: 27780
Number of extensions: 229268
Number of successful extensions: 411
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)