Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0729.Seq
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    79   2e-16
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    79   2e-16
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    28   0.53 
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   0.93 
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    27   1.2  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   3.7  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   3.7  
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    25   3.7  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   3.7  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    24   8.6  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   8.6  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 79.4 bits (187), Expect = 2e-16
 Identities = 39/78 (50%), Positives = 54/78 (69%)
 Frame = +3

Query: 39  KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 218
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 219 RRLGTHIRAKRKVKNLAT 272
           +RLGT  RAK K++ L +
Sbjct: 73  KRLGTLKRAKGKIEELTS 90


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 79.0 bits (186), Expect = 2e-16
 Identities = 39/78 (50%), Positives = 54/78 (69%)
 Frame = +3

Query: 39  KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 218
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 219 RRLGTHIRAKRKVKNLAT 272
           +RLGT  RAK K++ L +
Sbjct: 73  KRLGTLKRAKGKIEELTS 90


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 0.53
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +3

Query: 123 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRKVKNL 266
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R++  L
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYL 86


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 0.93
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = +2

Query: 125  STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 226
            +TR+C T+S+ EEG+    V+  +KR+  +++L+A I
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 249 RKVKNLATCSLR*GRQPPRLITITI 323
           + VKNL   SL+    PPRLIT+ +
Sbjct: 420 KSVKNLKLLSLKYDVTPPRLITVCV 444


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -1

Query: 196 LSFDTLSNSIALFSY*ACPTTS 131
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 69  RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 173
           RPA L+ L+T  SKFV  +    V    Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 188 KRQACSEVLEATIGHTHPRQEEGEELSN 271
           K  +   + EATI    P +EE E LSN
Sbjct: 107 KIDSLKSIAEATISGLIPTKEEAERLSN 134


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 184 TLSNSIALFSY*ACPTTSRTKSRTNLECF 98
           T+++S  LF+  A   T+ TKS  N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 240 GCVCPIVASRTSEHACLLT 184
           GCVCP++    SE A +L+
Sbjct: 189 GCVCPLLIDLESEDADVLS 207


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = +3

Query: 6   GHKTTKISAGRKGITDKAIRIRPARLKGL------QTKHSKFV-RDLVREVVGHAQYEKR 164
           G+   K S      TDK   I+P  LKGL       TK ++ + RDL+R V+G    E +
Sbjct: 730 GNPVDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLIR-VMGMLDIEYK 788

Query: 165 AME 173
            ++
Sbjct: 789 EIK 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,796
Number of Sequences: 5004
Number of extensions: 21752
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)