Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0729.Seq
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...    88   2e-18
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018     87   4e-18
07_03_0078 - 13147741-13148913                                         30   0.49 
01_06_0817 + 32214729-32215078,32215247-32215348,32216559-32217951     28   2.0  
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    27   3.5  
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999...    27   4.6  
07_03_1117 - 24096425-24097853,24097894-24098336                       27   6.1  

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score = 88.2 bits (209), Expect = 2e-18
 Identities = 44/75 (58%), Positives = 53/75 (70%)
 Frame = +3

Query: 45  ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRR 224
           +T + +  RP+  KG  TK   FVR L+REVVG A YEKR  ELLKV KDKRALK  KR+
Sbjct: 20  VTKRELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRITELLKVGKDKRALKVAKRK 79

Query: 225 LGTHIRAKRKVKNLA 269
           LGTH RAK+K + +A
Sbjct: 80  LGTHKRAKKKREEMA 94


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score = 87.0 bits (206), Expect = 4e-18
 Identities = 43/75 (57%), Positives = 53/75 (70%)
 Frame = +3

Query: 45  ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRR 224
           +T + +  RP+  KG  TK   FVR+L+REV G A YEKR  ELLKV KDKRALK  KR+
Sbjct: 20  VTKRELPPRPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRK 79

Query: 225 LGTHIRAKRKVKNLA 269
           LGTH RAK+K + +A
Sbjct: 80  LGTHKRAKKKREEMA 94


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 76  AGLILMALSVIPLRPADILVVLWPF 2
           AGL+  AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>01_06_0817 + 32214729-32215078,32215247-32215348,32216559-32217951
          Length = 614

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 362 FFFLKRKLVYLSLNGDGDEPGRLPSSSERARC*VLHLPLGADVCAQSS 219
           F F++RK V LS++ D  +   L ++ ERA    L  P GA +   +S
Sbjct: 442 FRFVRRKNVLLSIDSDKTDEAELQAAVERAS--ALLSPYGASIVEYTS 487


>04_04_1144 +
           31222556-31222633,31223238-31227665,31227724-31227789,
           31227790-31228014,31228097-31228255,31228393-31228551,
           31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/57 (26%), Positives = 33/57 (57%)
 Frame = +3

Query: 54  KAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRR 224
           +A + + A L+ +    S+  ++LV E +G    EK+ +ELL +  +++  ++LK +
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEK 694


>06_03_0032 -
           15697530-15697669,15699215-15699437,15699823-15699929,
           15700047-15700224,15700393-15700455,15700474-15700602,
           15701211-15701430,15702162-15702262,15702954-15703062,
           15705169-15705290,15705473-15705515,15705848-15705903,
           15705983-15706089,15706167-15706342,15706507-15706618,
           15706711-15706759,15707184-15707276,15707452-15707571,
           15707686-15707787,15709442-15709540,15710103-15710237,
           15710421-15710499,15710747-15710822,15710904-15710993,
           15711139-15711217,15711304-15711338,15711457-15711531,
           15712628-15713375
          Length = 1221

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 344 KLVYLSLNGDGDEPGRLPSSSERARC*VLHLP 249
           +LV L+  GDG E   +P   +   C  LH P
Sbjct: 34  ELVDLTTEGDGVEDQNIPGKDDAVLCTTLHSP 65


>07_03_1117 - 24096425-24097853,24097894-24098336
          Length = 623

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -3

Query: 362 FFFLKRKLVYLSLNGDGDEPGRLPSSSERARC*VLHLPLGADVCAQSS 219
           F F++RK V LS+  D  +   L  + ERA    L  P GA V   +S
Sbjct: 453 FRFVRRKNVLLSIESDKTDEAELQRAVERAS--ALLRPHGASVVEYTS 498


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,481,001
Number of Sequences: 37544
Number of extensions: 143178
Number of successful extensions: 337
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)