Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0729.Seq
(370 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 97 3e-21
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.17
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09) 27 3.6
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97) 27 3.6
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05) 27 4.8
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 27 4.8
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_786| Best HMM Match : EGF (HMM E-Value=0) 26 8.3
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 97.5 bits (232), Expect = 3e-21
Identities = 46/83 (55%), Positives = 59/83 (71%)
Frame = +3
Query: 24 ISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRA 203
+ G K +T + +P+R KG K KFVRD+VREVVG A YEKR MELL++ KDKRA
Sbjct: 5 LQKGHK-VTKNVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKRVMELLRIGKDKRA 63
Query: 204 LKFLKRRLGTHIRAKRKVKNLAT 272
LKF K+RLGTH+R KRK + + +
Sbjct: 64 LKFCKKRLGTHVRGKRKREEITS 86
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 31.9 bits (69), Expect = 0.17
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +3
Query: 84 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKVKN 263
+GL+ K R ++ E GH Y+K L KVS+ K A + L G H K++ +
Sbjct: 88 RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HCSYKKEHRG 145
Query: 264 LATCSL 281
L T +
Sbjct: 146 LRTARI 151
Score = 31.1 bits (67), Expect = 0.29
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +3
Query: 84 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKVKN 263
+GL+ K + ++ E GHA Y+K L KVS++ +A + + G H K++ +
Sbjct: 32 RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSRE-QAQRIIDETAG-HGSYKKEYRG 89
Query: 264 LATCSLR*GRQ 296
L S + R+
Sbjct: 90 LRKVSRKHARR 100
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 123 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKVKNLATCS 278
++ E GH Y+K L KVS+ K A + L G H K++ + L S
Sbjct: 17 ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKVS 66
>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.9 bits (59), Expect = 2.7
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +3
Query: 6 GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM-ELLK 182
G K +S + ++ IR + LKG Q ++ + RDL ++ E R E K
Sbjct: 545 GGKLKSVSEEEQKRLEREIREQEELLKGYQQENERLYRDLKQQQASSKATEGRMFSENQK 604
Query: 183 VSKDKRALKFLKRRLGTHI-RAKRKVK 260
+ + + LK R I R RK+K
Sbjct: 605 LGATSQEREDLKLRYEDEIDRLNRKLK 631
>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
Length = 1248
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 69 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 200
RP +L+ ++ + +VR L + G +Y + L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668
>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
Length = 971
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 228 PIVASRTSEHACLLTP*VTP*PSSHIERVRQLRVLNHGQTW 106
P +S A L+ P PS ++ R+ R NHG+TW
Sbjct: 772 PTERDYSSALAALMRKAKQPKPSPNLVHTRRERPRNHGRTW 812
>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
Length = 493
Score = 27.1 bits (57), Expect = 4.8
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 81 LKGLQTKHSKFVRDLVREVVGHAQYEKR-AMELLKVSKDKRALKFLKRRLGTHIRAKRKV 257
LK + K + +R++++ + +K+ A L K + K ALK K+RL T IRA+ +
Sbjct: 308 LKQTKKKLATPLREVIKSKPKLKETKKKLATPLRKEIQSKPALKETKKRLATPIRAEIES 367
Query: 258 K 260
K
Sbjct: 368 K 368
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 27.1 bits (57), Expect = 4.8
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 48 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 206
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKSCPQLSDITKPLRDL 712
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 26.6 bits (56), Expect = 6.3
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 48 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 206
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 618 TDKGLKVNPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 671
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 26.2 bits (55), Expect = 8.3
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 123 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRK 254
L R V+ Y+ + + + ++ ++FL +RL ++ KRK
Sbjct: 1235 LTRNVIYRNPYQPITYDYRTIGEQRQRVRFLAKRLSKILKRKRK 1278
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,898,460
Number of Sequences: 59808
Number of extensions: 174432
Number of successful extensions: 455
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -