Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0729.Seq
(370 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 103 2e-22
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 103 2e-22
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 103 2e-22
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 103 2e-22
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 103 2e-22
AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 53 3e-07
BC113409-1|AAI13410.1| 1416|Homo sapiens uveal autoantigen with ... 31 0.88
BC113407-1|AAI13408.1| 1416|Homo sapiens uveal autoantigen with ... 31 0.88
AF322916-1|AAG49577.1| 1416|Homo sapiens uveal autoantigen protein. 31 0.88
AB046781-1|BAB13387.2| 1416|Homo sapiens KIAA1561 protein protein. 31 0.88
BC065563-1|AAH65563.1| 941|Homo sapiens vacuolar protein sortin... 30 2.0
AK223158-1|BAD96878.1| 941|Homo sapiens vacuolar protein sortin... 30 2.0
AF308800-1|AAG34677.1| 941|Homo sapiens vacuolar protein sortin... 30 2.0
AB027508-1|BAA95163.2| 941|Homo sapiens hVPS11 protein. 30 2.0
U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein ... 29 3.5
CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein. 29 3.5
BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein pr... 29 3.5
BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protei... 29 3.5
AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protei... 29 3.5
AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protei... 29 3.5
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 103 bits (247), Expect = 2e-22
Identities = 50/82 (60%), Positives = 65/82 (79%)
Frame = +3
Query: 24 ISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRA 203
++ G K +T + R +R +G TKH+KFVRD++REV G A YE+RAMELLKVSKDKRA
Sbjct: 11 LNKGHK-VTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRA 69
Query: 204 LKFLKRRLGTHIRAKRKVKNLA 269
LKF+K+R+GTHIRAKRK + L+
Sbjct: 70 LKFIKKRVGTHIRAKRKREELS 91
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 103 bits (247), Expect = 2e-22
Identities = 50/82 (60%), Positives = 65/82 (79%)
Frame = +3
Query: 24 ISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRA 203
++ G K +T + R +R +G TKH+KFVRD++REV G A YE+RAMELLKVSKDKRA
Sbjct: 11 LNKGHK-VTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRA 69
Query: 204 LKFLKRRLGTHIRAKRKVKNLA 269
LKF+K+R+GTHIRAKRK + L+
Sbjct: 70 LKFIKKRVGTHIRAKRKREELS 91
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 103 bits (247), Expect = 2e-22
Identities = 50/82 (60%), Positives = 65/82 (79%)
Frame = +3
Query: 24 ISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRA 203
++ G K +T + R +R +G TKH+KFVRD++REV G A YE+RAMELLKVSKDKRA
Sbjct: 11 LNKGHK-VTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRA 69
Query: 204 LKFLKRRLGTHIRAKRKVKNLA 269
LKF+K+R+GTHIRAKRK + L+
Sbjct: 70 LKFIKKRVGTHIRAKRKREELS 91
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 103 bits (247), Expect = 2e-22
Identities = 50/82 (60%), Positives = 65/82 (79%)
Frame = +3
Query: 24 ISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRA 203
++ G K +T + R +R +G TKH+KFVRD++REV G A YE+RAMELLKVSKDKRA
Sbjct: 11 LNKGHK-VTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRA 69
Query: 204 LKFLKRRLGTHIRAKRKVKNLA 269
LKF+K+R+GTHIRAKRK + L+
Sbjct: 70 LKFIKKRVGTHIRAKRKREELS 91
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 103 bits (247), Expect = 2e-22
Identities = 50/82 (60%), Positives = 65/82 (79%)
Frame = +3
Query: 24 ISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRA 203
++ G K +T + R +R +G TKH+KFVRD++REV G A YE+RAMELLKVSKDKRA
Sbjct: 11 LNKGHK-VTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRA 69
Query: 204 LKFLKRRLGTHIRAKRKVKNLA 269
LKF+K+R+GTHIRAKRK + L+
Sbjct: 70 LKFIKKRVGTHIRAKRKREELS 91
>AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36
protein.
Length = 32
Score = 53.2 bits (122), Expect = 3e-07
Identities = 24/31 (77%), Positives = 29/31 (93%)
Frame = +3
Query: 177 LKVSKDKRALKFLKRRLGTHIRAKRKVKNLA 269
LKVSKDKRALKF+K+R+GTHIRAKRK + L+
Sbjct: 1 LKVSKDKRALKFIKKRVGTHIRAKRKREELS 31
>BC113409-1|AAI13410.1| 1416|Homo sapiens uveal autoantigen with
coiled-coil domains and ankyrin repeats protein.
Length = 1416
Score = 31.5 bits (68), Expect = 0.88
Identities = 23/110 (20%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +3
Query: 3 KGHKTTKISAGRKGITDK-AIRIRPARLKGLQTKHSKFVRDLVREVVG-HAQYEKRAMEL 176
KG K T++ K ++ K A+ I + + +++ S V + +++V ++EK E+
Sbjct: 605 KGRKVTEMEGQAKELSAKLALSIPAEKFENMKSSLSNEVNEKAKKLVEMEREHEKSLSEI 664
Query: 177 LKVSKDKRALKFLKRRLGTHIRAKRKVKNLATCSLR*GRQPPRLITITIK 326
++ KR L+ +K +L H++ + + + + G ++ +T+K
Sbjct: 665 RQL---KRELENVKAKLAQHVKPEEHEQVKSRLEQKSGELGKKITELTLK 711
>BC113407-1|AAI13408.1| 1416|Homo sapiens uveal autoantigen with
coiled-coil domains and ankyrin repeats protein.
Length = 1416
Score = 31.5 bits (68), Expect = 0.88
Identities = 23/110 (20%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +3
Query: 3 KGHKTTKISAGRKGITDK-AIRIRPARLKGLQTKHSKFVRDLVREVVG-HAQYEKRAMEL 176
KG K T++ K ++ K A+ I + + +++ S V + +++V ++EK E+
Sbjct: 605 KGRKVTEMEGQAKELSAKLALSIPAEKFENMKSSLSNEVNEKAKKLVEMEREHEKSLSEI 664
Query: 177 LKVSKDKRALKFLKRRLGTHIRAKRKVKNLATCSLR*GRQPPRLITITIK 326
++ KR L+ +K +L H++ + + + + G ++ +T+K
Sbjct: 665 RQL---KRELENVKAKLAQHVKPEEHEQVKSRLEQKSGELGKKITELTLK 711
>AF322916-1|AAG49577.1| 1416|Homo sapiens uveal autoantigen protein.
Length = 1416
Score = 31.5 bits (68), Expect = 0.88
Identities = 23/110 (20%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +3
Query: 3 KGHKTTKISAGRKGITDK-AIRIRPARLKGLQTKHSKFVRDLVREVVG-HAQYEKRAMEL 176
KG K T++ K ++ K A+ I + + +++ S V + +++V ++EK E+
Sbjct: 605 KGRKVTEMEGQAKELSAKLALSIPAEKFENMKSSLSNEVNEKAKKLVEMEREHEKSLSEI 664
Query: 177 LKVSKDKRALKFLKRRLGTHIRAKRKVKNLATCSLR*GRQPPRLITITIK 326
++ KR L+ +K +L H++ + + + + G ++ +T+K
Sbjct: 665 RQL---KRELENVKAKLAQHVKPEEHEQVKSRLEQKSGELGKKITELTLK 711
>AB046781-1|BAB13387.2| 1416|Homo sapiens KIAA1561 protein protein.
Length = 1416
Score = 31.5 bits (68), Expect = 0.88
Identities = 23/110 (20%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Frame = +3
Query: 3 KGHKTTKISAGRKGITDK-AIRIRPARLKGLQTKHSKFVRDLVREVVG-HAQYEKRAMEL 176
KG K T++ K ++ K A+ I + + +++ S V + +++V ++EK E+
Sbjct: 605 KGRKVTEMEGQAKELSAKLALSIPAEKFENMKSSLSNEVNEKAKKLVEMEREHEKSLSEI 664
Query: 177 LKVSKDKRALKFLKRRLGTHIRAKRKVKNLATCSLR*GRQPPRLITITIK 326
++ KR L+ +K +L H++ + + + + G ++ +T+K
Sbjct: 665 RQL---KRELENVKAKLAQHVKPEEHEQVKSRLEQKSGELGKKITELTLK 711
>BC065563-1|AAH65563.1| 941|Homo sapiens vacuolar protein sorting
11 homolog (S. cerevisiae) protein.
Length = 941
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 362 FFFLKRKLVYLSLNGDGDEPGRLPSSSERARC*VLHLPLGADVC 231
F F ++LV L+ DG PG P+S A L LP G VC
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAASK-FLCLPPGITVC 52
>AK223158-1|BAD96878.1| 941|Homo sapiens vacuolar protein sorting
11 (yeast homolog) variant protein.
Length = 941
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 362 FFFLKRKLVYLSLNGDGDEPGRLPSSSERARC*VLHLPLGADVC 231
F F ++LV L+ DG PG P+S A L LP G VC
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAASK-FLCLPPGITVC 52
>AF308800-1|AAG34677.1| 941|Homo sapiens vacuolar protein sorting
protein 11 protein.
Length = 941
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 362 FFFLKRKLVYLSLNGDGDEPGRLPSSSERARC*VLHLPLGADVC 231
F F ++LV L+ DG PG P+S A L LP G VC
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAASK-FLCLPPGITVC 52
>AB027508-1|BAA95163.2| 941|Homo sapiens hVPS11 protein.
Length = 941
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 362 FFFLKRKLVYLSLNGDGDEPGRLPSSSERARC*VLHLPLGADVC 231
F F ++LV L+ DG PG P+S A L LP G VC
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAASK-FLCLPPGITVC 52
>U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein 8
protein.
Length = 400
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 21 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 173
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein.
Length = 405
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 21 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 173
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein
protein.
Length = 400
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 21 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 173
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 21 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 173
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 21 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 173
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protein 8
variant protein.
Length = 481
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 21 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 173
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,930,799
Number of Sequences: 237096
Number of extensions: 759587
Number of successful extensions: 1508
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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