Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0729.Seq
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...    87   3e-18
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    30   0.59 
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    29   0.79 
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    29   0.79 
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    28   1.8  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   1.8  
Z81475-8|CAL90887.1|  676|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z81475-7|CAB03914.2|  653|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AF016421-8|AAO12431.1|  230|Caenorhabditis elegans Hypothetical ...    27   4.2  
AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical ...    27   4.2  
Z82264-3|CAB05166.1|  277|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical ...    26   9.7  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 41/73 (56%), Positives = 55/73 (75%)
 Frame = +3

Query: 48  TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL 227
           T   ++ R  R KG+ +K +K VR+LVRE+ G A YE+R +E+L++SKDKRALKFLKRR+
Sbjct: 20  TQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRI 79

Query: 228 GTHIRAKRKVKNL 266
           GTH RAK K + L
Sbjct: 80  GTHRRAKGKREEL 92


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
 Frame = +3

Query: 66  IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR--------ALKFLKR 221
           ++  ++  L T    +   L+REV G   Y++R  E LK+ K+ +         LK++  
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETKMKTEKIQGLLKYIDE 199

Query: 222 RLGTHIRAKRKVK 260
           RL T    K  +K
Sbjct: 200 RLQTLENEKEDLK 212


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 69  RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 206
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 69  RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 206
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 81  LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 200
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +3

Query: 81  LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 200
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>Z81475-8|CAL90887.1|  676|Caenorhabditis elegans Hypothetical
           protein C24H11.8b protein.
          Length = 676

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 295 CLPHLSEHVAKFFTFLLARMCVPNRRFKNFRARLSFDTLS 176
           CL +++E +A+ FT++  ++C    R++  R R+    LS
Sbjct: 167 CLANIAETLAQVFTYIYFKLCCAYCRWQKNRRRVRRAALS 206


>Z81475-7|CAB03914.2|  653|Caenorhabditis elegans Hypothetical
           protein C24H11.8a protein.
          Length = 653

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -1

Query: 295 CLPHLSEHVAKFFTFLLARMCVPNRRFKNFRARLSFDTLS 176
           CL +++E +A+ FT++  ++C    R++  R R+    LS
Sbjct: 167 CLANIAETLAQVFTYIYFKLCCAYCRWQKNRRRVRRAALS 206


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 114 VRDLVREVVGHAQYEKRAMELLKV 185
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>AF016421-8|AAO12431.1|  230|Caenorhabditis elegans Hypothetical
           protein F44E7.5b protein.
          Length = 230

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +3

Query: 90  LQTKHSKFVRDLVREVVGHAQY-------EKRAMELLKVSKDKRALKFLKRRLGTHIRAK 248
           L +K S  +R+LV+ V+GH +        +    +  K SK+K   + +  R G++ R +
Sbjct: 24  LLSKSSSKLRELVQFVIGHYEAHLHITLPKDECCDEEKCSKEKVQFEMILNRKGSYRRGR 83

Query: 249 RKVKNLATC 275
               ++ TC
Sbjct: 84  AHFHSIFTC 92


>AF016421-7|AAO12430.1|  413|Caenorhabditis elegans Hypothetical
           protein F44E7.5a protein.
          Length = 413

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = +3

Query: 90  LQTKHSKFVRDLVREVVGHAQY-------EKRAMELLKVSKDKRALKFLKRRLGTHIRAK 248
           L +K S  +R+LV+ V+GH +        +    +  K SK+K   + +  R G++ R +
Sbjct: 24  LLSKSSSKLRELVQFVIGHYEAHLHITLPKDECCDEEKCSKEKVQFEMILNRKGSYRRGR 83

Query: 249 RKVKNLATC 275
               ++ TC
Sbjct: 84  AHFHSIFTC 92


>Z82264-3|CAB05166.1|  277|Caenorhabditis elegans Hypothetical
           protein C49C3.7 protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 168 MELLKVSKD-KRALKFLKRRLGTHIRAKRKVKN 263
           +ELLKV+   K+ L+FLK + G   +   K+K+
Sbjct: 126 VELLKVTDQLKKELEFLKAQQGNQFKVDMKIKS 158


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 123 LVREVVGHAQYEKRAMELLKV 185
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


>Z54284-4|CAA91061.1| 1001|Caenorhabditis elegans Hypothetical
           protein D2085.4 protein.
          Length = 1001

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 329 SLNGDGDEPGRLPSSSERARC*VLHLP 249
           S N D DE   LP+   RA C + H+P
Sbjct: 572 SENDDEDEDNNLPAVLRRAICVMKHIP 598


>AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical
           protein ZK973.8 protein.
          Length = 392

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 87  GLQTKHSKFVRDLVREVVGHAQYEKRAMELLKV 185
           G  T  S  VRD +  V+G+ +YE    E+L V
Sbjct: 126 GYSTPASGAVRDFLVGVIGNRRYENCMFEILTV 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,117,714
Number of Sequences: 27780
Number of extensions: 123038
Number of successful extensions: 335
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)