Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0729.Seq
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    26   0.12 
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    26   0.12 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   1.5  
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    22   2.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.6  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 0.12
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 87  GLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTH-IRAKR 251
           GLQ K      D +   +    YEKR+ +   V     + K  + R+G H +R KR
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK--RARMGFHGMRGKR 266


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 0.12
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 87  GLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTH-IRAKR 251
           GLQ K      D +   +    YEKR+ +   V     + K  + R+G H +R KR
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK--RARMGFHGMRGKR 266


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 212 LEATIGHTHPRQEEGEELSNVLAQMRK 292
           L+A  GH   +Q+E +  S V A +++
Sbjct: 486 LDAVTGHQSQQQQEEQTQSRVRAHLKR 512


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor
          protein.
          Length = 53

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 17 N*NIRWPQGY 46
          N  I+WPQGY
Sbjct: 44 NPKIKWPQGY 53


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 81  LKGLQT-KHSKFVRDLVREVVGHAQYEKRAME 173
           +K ++T K   FV   V EV+ + + EKR  E
Sbjct: 510 VKTMKTIKKGSFVTQYVGEVITNEEAEKRGKE 541


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,030
Number of Sequences: 438
Number of extensions: 1384
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)