Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0729.Seq
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    84   2e-17
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            83   4e-17
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    82   1e-16
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    61   3e-10
At5g57880.1 68418.m07240 expressed protein  ; expression support...    28   2.2  
At1g06440.1 68414.m00682 expressed protein                             26   9.0  

>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 40/76 (52%), Positives = 54/76 (71%)
 Frame = +3

Query: 45  ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRR 224
           +T + +  RP   KG  +K + F+R+L++EV G A YEKR  ELLKV KDKRALK  KR+
Sbjct: 20  VTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRK 79

Query: 225 LGTHIRAKRKVKNLAT 272
           LGTH RAKRK + +++
Sbjct: 80  LGTHKRAKRKREEMSS 95


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 83.4 bits (197), Expect = 4e-17
 Identities = 41/76 (53%), Positives = 53/76 (69%)
 Frame = +3

Query: 45  ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRR 224
           +T + +  RP   KG  +K + F+R L+REV G A YEKR  ELLKV KDKRALK  KR+
Sbjct: 20  VTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRK 79

Query: 225 LGTHIRAKRKVKNLAT 272
           LGTH RAKRK + +++
Sbjct: 80  LGTHKRAKRKREEMSS 95


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 82.2 bits (194), Expect = 1e-16
 Identities = 39/68 (57%), Positives = 50/68 (73%)
 Frame = +3

Query: 69  RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK 248
           RP   KG  +K + F+R+L++EV G A YEKR  ELLKV KDKRALK  KR+LGTH RAK
Sbjct: 24  RPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK 83

Query: 249 RKVKNLAT 272
           RK + +++
Sbjct: 84  RKREEMSS 91


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 33/76 (43%), Positives = 48/76 (63%)
 Frame = +3

Query: 45  ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRR 224
           +T + +  RP   KG  +K + F+R+L++EV G A YEKR  ELLKV+         KR+
Sbjct: 20  VTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVA---------KRK 70

Query: 225 LGTHIRAKRKVKNLAT 272
           LGTH RAKRK + +++
Sbjct: 71  LGTHKRAKRKREEMSS 86


>At5g57880.1 68418.m07240 expressed protein  ; expression supported
           by MPSS
          Length = 385

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 337 FIYHLMVMVMSLGGCLPHLSEHVAKFFTFLLARMCVP 227
           FI+  +  ++S+G  L  + E ++   T L+ RMC P
Sbjct: 192 FIFASLKKLISMGRNLESVEESISFMITQLITRMCTP 228


>At1g06440.1 68414.m00682 expressed protein
          Length = 390

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 106 PSLSVI*YAKLSDTLNMRRGLWSYLR 183
           PSLS+   ++LS  L++ RG  S+LR
Sbjct: 69  PSLSIEFLSRLSQKLHLNRGAASFLR 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,784,519
Number of Sequences: 28952
Number of extensions: 116525
Number of successful extensions: 310
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 487896136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)