Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0728.Seq
         (489 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5F4U6 Cluster: Serpentine receptor, class h protein 2,...    36   0.37 
UniRef50_Q8IJI6 Cluster: Putative uncharacterized protein; n=2; ...    32   7.9  

>UniRef50_Q5F4U6 Cluster: Serpentine receptor, class h protein 2,
           isoform b; n=2; Caenorhabditis elegans|Rep: Serpentine
           receptor, class h protein 2, isoform b - Caenorhabditis
           elegans
          Length = 317

 Score = 36.3 bits (80), Expect = 0.37
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 310 PPCFICLLLYILRFEISNIIIFMYKMRNARAHTAKTSKRRV-HVQT 444
           P CF+ L++ ++   ++ I IF+Y+M  A  HTA T   ++ H QT
Sbjct: 90  PECFLILVVILIYNGLACIFIFLYRMEVASKHTAPTMLYKITHFQT 135


>UniRef50_Q8IJI6 Cluster: Putative uncharacterized protein; n=2;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 4431

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 309  TTVFYMFIIIYFEIRNFEYYN-IYV*NAKRARAHGEN-VETSRTRPNVTESRVRAF 470
            T +FY +I IY  I NF YYN +Y    K+    GE+ +   + + N+   R  +F
Sbjct: 3969 TKLFYYYISIYMNIVNFLYYNMLYKMKKKKKDLSGEDKIFMKKLKINLKNKRKFSF 4024


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,529,167
Number of Sequences: 1657284
Number of extensions: 5322364
Number of successful extensions: 14170
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14160
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)