Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0728.Seq
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    27   8.1  

>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 343 LRFEISNIII-FMYKMRNARA-HTAKTSKRRVHVQTSRRVA 459
           L FEI + +  F YK+ +     TAK  KR  HV+  RR+A
Sbjct: 615 LAFEIEDAVDEFTYKLEDKHGGFTAKMKKRIKHVKAWRRLA 655


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,754,521
Number of Sequences: 37544
Number of extensions: 137949
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)