Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0728.Seq
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40)                 29   2.1  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   3.6  
SB_20162| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  

>SB_45532| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-40)
          Length = 368

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 309 TTVFYMFIIIYFEIRNFEYYNIYV*NAKRARAHGENVETSRTRPNVTESRVRAFL 473
           T V Y  + +   +  F YYNI+    K   +  +N+  + T PN+ + +V   L
Sbjct: 184 TFVVYAIVFLPMCVITFCYYNIFKTIRKHQVSMQQNINDTTTGPNIQDIKVTRVL 238


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 123 ISVSVMVFCSARIVLC----VCCRARAVRSSIRYIMSAVR 16
           ++ +V+V CS R+  C    VCC  R V  S R   + +R
Sbjct: 365 VAYAVVVCCSCRVACCSCRVVCCSCRVVCCSCRVAHAVLR 404


>SB_20162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +3

Query: 222 TSALESENAVIKEKLTDVLVFLTCVC---VRCTTVFYMFIIIYFEIRNFEYYNIYV 380
           TSAL+ ENA +K +L      +T  C   ++   +    I I   + NF Y  I++
Sbjct: 624 TSALQKENAALKSELDSGSTAVTKCCPELMKIAVIAIRGIRILTPVLNFPYLAIFI 679


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,932,597
Number of Sequences: 59808
Number of extensions: 198375
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)