Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0728.Seq
         (489 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    25   1.4  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    24   3.2  

>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 319 FICLLLYILRFEISNIIIFMYKMRNARAH 405
           F C++  +    +S I+I  Y  RNA  H
Sbjct: 313 FNCIMFMVASSVVSTILILNYHHRNADTH 341


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 319 FICLLLYILRFEISNIIIFMYKMRNARAH 405
           F C++  +    +S I+I  Y  RN+  H
Sbjct: 281 FNCIMFMVASSVVSTILILNYHHRNSDTH 309


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,226
Number of Sequences: 2352
Number of extensions: 6258
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43131618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)