Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0728.Seq
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine re...    36   0.012
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    28   3.2  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AL021493-3|CAA16390.2|  243|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    27   7.3  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      27   7.3  
Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine
           receptor, class h protein2, isoform b protein.
          Length = 317

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 310 PPCFICLLLYILRFEISNIIIFMYKMRNARAHTAKTSKRRV-HVQT 444
           P CF+ L++ ++   ++ I IF+Y+M  A  HTA T   ++ H QT
Sbjct: 90  PECFLILVVILIYNGLACIFIFLYRMEVASKHTAPTMLYKITHFQT 135


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 130 HCNFGVSNGIL*CAYSFMRVLPCACSTQQY 41
           +CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 172 NCNFVPSNHQNQCQFSFVLVISCADQSIQY 201


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 130 HCNFGVSNGIL*CAYSFMRVLPCACSTQQY 41
           +CNF  SN    C +SF+ V+ CA  + QY
Sbjct: 136 NCNFVPSNHQNQCQFSFVLVISCADQSIQY 165


>AL021493-3|CAA16390.2|  243|Caenorhabditis elegans Hypothetical
           protein Y51A2B.3 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 482 SLPQERAHATLRDVWTCTRRFDVFAVCARAF 390
           SLP     A  + VW   RRF+ +A+ A  F
Sbjct: 50  SLPNHEKLAIFKTVWAIWRRFERYAMSAEIF 80


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
          protein ZK520.3a protein.
          Length = 1383

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 79 MRVLPCACSTQQY*IYNVSSQIQYRR 2
          ++V+PC  +  Q     VS+Q+QYRR
Sbjct: 3  LKVIPCTLTKNQEVFKCVSAQLQYRR 28


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
          protein ZK520.3a protein.
          Length = 1383

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 79 MRVLPCACSTQQY*IYNVSSQIQYRR 2
          ++V+PC  +  Q     VS+Q+QYRR
Sbjct: 3  LKVIPCTLTKNQEVFKCVSAQLQYRR 28


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 79 MRVLPCACSTQQY*IYNVSSQIQYRR 2
          ++V+PC  +  Q     VS+Q+QYRR
Sbjct: 3  LKVIPCTLTKNQEVFKCVSAQLQYRR 28


>Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical
           protein T19C4.8 protein.
          Length = 306

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +3

Query: 255 KEKLTDVLVFLTCVCVRCTTVFYMF-IIIYFEIRNFEY 365
           K  + D+   L+C  V CT V  +   I Y +IR F +
Sbjct: 168 KYNIKDIFTTLSCFMVSCTVVTMISNFISYLKIRTFPF 205


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,671,007
Number of Sequences: 27780
Number of extensions: 139081
Number of successful extensions: 409
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)